Amar034287.1
Basic Information
- Insect
- Anisolabis maritima
- Gene Symbol
- -
- Assembly
- GCA_010014785.1
- Location
- JAAAKE010001438.1:17205-21885[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 7.2 2.4e+03 1.2 5.0 1 23 24 45 24 45 0.81 2 20 0.0053 1.8 11.0 3.1 1 23 55 78 55 78 0.96 3 20 0.0007 0.23 13.8 0.5 2 23 80 102 79 102 0.94 4 20 0.0014 0.48 12.8 0.1 1 23 104 126 104 126 0.97 5 20 0.012 3.9 9.9 2.7 1 23 366 388 366 388 0.95 6 20 2.5e-08 8.4e-06 27.8 1.5 1 23 396 418 396 418 0.98 7 20 0.041 14 8.2 2.2 2 23 426 448 425 448 0.95 8 20 0.022 7.1 9.1 5.2 1 23 452 474 452 474 0.96 9 20 0.0017 0.57 12.6 0.4 1 23 480 503 480 503 0.95 10 20 5.6e-07 0.00019 23.5 4.2 1 23 510 532 510 532 0.98 11 20 0.00024 0.081 15.2 1.5 2 23 541 563 540 563 0.96 12 20 0.0039 1.3 11.4 2.3 1 23 567 589 567 589 0.95 13 20 0.0011 0.37 13.2 2.3 1 23 595 618 595 618 0.96 14 20 0.0077 2.6 10.5 1.6 2 23 622 643 621 643 0.97 15 20 6.5e-06 0.0021 20.2 0.4 1 23 650 672 650 672 0.98 16 20 0.0017 0.55 12.6 0.2 2 23 679 700 678 700 0.96 17 20 2.2e-05 0.0073 18.5 1.2 1 23 706 728 706 728 0.97 18 20 0.00028 0.092 15.1 2.8 1 23 734 757 734 757 0.97 19 20 8e-06 0.0027 19.9 0.3 1 23 763 785 763 785 0.98 20 20 0.0032 1 11.7 2.0 1 23 791 814 791 814 0.96
Sequence Information
- Coding Sequence
- atggaatCAGACATGGagcataaagagaaaaaagtgaagcaaacgttaaaattaacaaaattcaaaacttttaaatgtaGCAAATGCAATTTTACACAACGTTCTgattttagaaaacattttttaaatgaacatattagaaataaatcgccaccagtaaattttaaatgtaattattgtgatttttcaactatttataaatcaacattcgaagaacattttttgaaaaatcatcaaacatgtaatatttgtaatttaagtttcaatttttataaagaattacaGGATCATTTATTACAAGCGCACGCCTATATATGCAACATATGCTCGGAAAGTTTCAATTCTGAAATTCTTATGGATATCCATATGAAATTGCATCAGAGCATCactgagaatttaaaattaaatgaaatctccACGCCAATTTTAGATGAGTCGTTAAATTCTGAGGGCCATCAAAAAATGATGGAgatcattaatgaaaattctctGCAATTTGACGATCTGACTGATACCAGTGCAACAACAGAAAACATCACACAAACATCCTCAACTCCGAATTTTGATGAATTGTTCGAGACAAATAAAAGTCCATTAGATGACGTCaattctaatcttattatatcaACAATGAATTACACCTCGGGGGAAGTGGAAGAGAGTGtcccaaaattgaaattagaagaaGAACCCAATATCCAAGTAGAAGAGGAACCGAAAATTCAAGTTGAACAATTAGTGTGCGAACCGATTATGGAAGTTGAGCAATTAGAAGAGGAACCCAAAATGCCAGTTGACCAATTAGAAGCAAACGAACCCAATATACAAATTGAGCAATTAGAAGATGGAAAACTTTTAGTTTATACAGACACTTTTGATTCTGAAAAGTTGAAACAATATTTAGAGAATTCAGGGATTAAATTGGAATTAGAGACAATTCCAGATCAGGAAGAGAATATTTCGTTACTCCCCGAGGCAAATGATGCTCTCCTTaacgaaaatattaatgaattaaaaacaattgatgAGACACCAGAAGATTTTCAAGATAATCAAATTTTCGAAGAAACTGGGAatgtgagtaaaaaaaagatttttgcatGTTCAAATTGTgatctaaaaacattttctgaaattcatattaaaagacATATGAAAACACATTTAGCGCTTGAGAGCAAAATGTACGAATGTAAAATATGTGAGAAAGTGTTTACAACGCTCAGCAATCTAAAAAGACATTTGAAAAACCACGAGAACTCACCAGGGAAAGTCACGTGCAAAGTCTGCTCCGTGGAACTCACCGACAAACTTCATCTAAAACATCATCTCGAGAAAGTTCACCCggaaatttataaatgcaaattttgctCTAAATCGTTCCCTAATAAACGCAGTTGTAAATTGCATGAAATGATACATGAATCGGAGGTGTCATTCCCGTGCACGTCTTGTGATATGACGTTCAAATCTGAAGTACGTTTGAAGGCGCACAAAGAATCTGCCCATCAggaagcaattaaaaatttccaatgccCTTTTTGTGATCGGATATTTTCCACATACCATAATCTAAAACGCCATCTGCGAAACCACCAAAAGAAGACCAACAACAAGAATCAATGTTGCATTTGCAACACCGAATTCCCTGATAAGTATTCTCTGAAAATGCACATAGAGAAAGAACACCCGAATATGTACCAGTGCACGTTTTGTGATAAGGTGTTCGCTGAAGAACACGCATGGCGAACACACGAACATCTACACCCCGAGCGAGTCAGTTTCAAGTGCGAACAATGTCATGAATCGTTCCCGATGTATTTGCAGTTGACCAAACATCGGAATCTCATCCATCGGGATTCTAagtgtaaatattgtaaaaaagtcATTGAAGATCGAACGAAACTTTTAGAGCACGAGAAAAGacatgagaaatataaaaagggatTCAAATGCACGTTTTGCCCGAAGGTGTTTGGCACGCCGTCAGGGCTGAAATATCATTTATCGGTACATACGGGCAAATATAATGTCTATTGCGAGATCTGCGGAAAAGGATTCCATTCCGAGGTGATGCTCGACGAACATCGGGCGACTCACACGAAAGAAGTCCGTTACATGTGCGAATTATGTGGGCGAAAATTCTCCTCAAATAGCACATACCGTCTGCATCGGCTCTGGCATGATAACCCCCTCCCCTACACCTGCAACATTTGCAATAAGAAATTCAAACATACCTCAATTCTCGCCGTGCATAAACGTCGCGCGCACACCGGCGAACGGCCCTATAAATGCCCTTATTGTTCACAAGCGTTTAGCGTCAGTAGCACCTTGGACAAGCATATTATCCTCCATACACGCCAATATCCCTTCAATTGTGAATTGTGTAAAAAAGGATTCACCACACGCCTGAAGATGGCCAAACATCTGTCCAAAACGCATAACGATAATAGTCTAATGAGCATGGTTCCGAGAAAGTGTGAATACAAAATGGTATTAAAACCGAGCGAGATGACGGAAGCACTGGATGAAGACCAACAACAGAATACGGCTTTGATAGGGGAAGAAGAGATGATGAATCCCGAACAAGGAGACGAAGAAGAAGGCGGAGGAGAAGACGAACAACAAGAAgaggaacaacaacaacaagtgaCATTCTTTGACGCTTCCCTTGCCGTCTCTGAAGAACAAGTTGCAGTCACCTCACAAACCATCGACGCTGTCGTCTCCGATTAcatcattttttga
- Protein Sequence
- MESDMEHKEKKVKQTLKLTKFKTFKCSKCNFTQRSDFRKHFLNEHIRNKSPPVNFKCNYCDFSTIYKSTFEEHFLKNHQTCNICNLSFNFYKELQDHLLQAHAYICNICSESFNSEILMDIHMKLHQSITENLKLNEISTPILDESLNSEGHQKMMEIINENSLQFDDLTDTSATTENITQTSSTPNFDELFETNKSPLDDVNSNLIISTMNYTSGEVEESVPKLKLEEEPNIQVEEEPKIQVEQLVCEPIMEVEQLEEEPKMPVDQLEANEPNIQIEQLEDGKLLVYTDTFDSEKLKQYLENSGIKLELETIPDQEENISLLPEANDALLNENINELKTIDETPEDFQDNQIFEETGNVSKKKIFACSNCDLKTFSEIHIKRHMKTHLALESKMYECKICEKVFTTLSNLKRHLKNHENSPGKVTCKVCSVELTDKLHLKHHLEKVHPEIYKCKFCSKSFPNKRSCKLHEMIHESEVSFPCTSCDMTFKSEVRLKAHKESAHQEAIKNFQCPFCDRIFSTYHNLKRHLRNHQKKTNNKNQCCICNTEFPDKYSLKMHIEKEHPNMYQCTFCDKVFAEEHAWRTHEHLHPERVSFKCEQCHESFPMYLQLTKHRNLIHRDSKCKYCKKVIEDRTKLLEHEKRHEKYKKGFKCTFCPKVFGTPSGLKYHLSVHTGKYNVYCEICGKGFHSEVMLDEHRATHTKEVRYMCELCGRKFSSNSTYRLHRLWHDNPLPYTCNICNKKFKHTSILAVHKRRAHTGERPYKCPYCSQAFSVSSTLDKHIILHTRQYPFNCELCKKGFTTRLKMAKHLSKTHNDNSLMSMVPRKCEYKMVLKPSEMTEALDEDQQQNTALIGEEEMMNPEQGDEEEGGGEDEQQEEEQQQQVTFFDASLAVSEEQVAVTSQTIDAVVSDYIIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -