Basic Information

Gene Symbol
-
Assembly
GCA_035222095.1
Location
JAWWEA010000118.1:6502035-6532525[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 4.5e-05 0.014 18.0 1.4 1 23 104 127 104 127 0.96
2 15 1.2 3.8e+02 4.0 0.1 2 22 316 336 315 338 0.75
3 15 0.81 2.5e+02 4.6 4.9 1 23 367 390 367 390 0.94
4 15 0.0007 0.21 14.3 0.3 2 23 426 448 425 448 0.90
5 15 0.07 21 8.0 0.9 1 20 517 536 517 540 0.91
6 15 1 3.1e+02 4.3 2.7 1 23 830 852 830 852 0.97
7 15 0.02 6.2 9.7 0.5 5 20 941 956 939 958 0.91
8 15 0.0035 1.1 12.0 0.7 1 23 1106 1128 1106 1128 0.98
9 15 0.28 85 6.1 0.1 6 23 1139 1157 1139 1157 0.94
10 15 1.3 4.1e+02 3.9 1.0 2 20 1162 1180 1161 1182 0.90
11 15 4.2 1.3e+03 2.4 1.6 1 23 1224 1247 1224 1247 0.91
12 15 5 1.5e+03 2.1 0.3 3 19 1252 1267 1251 1271 0.70
13 15 0.0016 0.49 13.1 1.3 1 22 1276 1297 1276 1299 0.88
14 15 0.0002 0.06 16.0 0.5 2 23 1330 1352 1329 1352 0.92
15 15 0.0012 0.36 13.5 0.9 2 20 1360 1378 1359 1380 0.94

Sequence Information

Coding Sequence
ATGATGGATGTGAGGGTTGACAACGCAGACACGTATTCTTCTCAGAAAGAAAGATACAATTTAAAAGAGTGTTTCATTCGGCTCGAAAAATGTGACAAAATCTGGGAAACGCTGAAGGTTATAAAGAATCTCCAGCTCACAGATTGCAACGAAAAGAACACCGAGAATTATGAAGCTGCCTTCCAAGATGCTGTGCAGAATCATCCAAAGCCCCCGACACCGGAACCGATGAAGTACCATCCAGTCCTAAACAATGGAAATGCTGCCGTGCCCAACTTCCAGTTCGCCATCAAAAGCTGGAAGCGATTATACACCTGTACTTACTGCGGAAAGCAATACACCGAGAATCGAAATCTAAAACTACACGTTTCAAAAGTTCACGGTATAGATCCTGTCCCCAAAGATGTTCCTCGACCCAAGGATGTTCCTAAAGTTCCTCTTCCTATTGAAACTCCACGTCCTCAGGAAATTCCCCGTCCCAAAGAAATCCCTCGCCTTAAGGAAATCCCTCGCCTTAAGGAACTTCCGCAACTGAAAGAAATTATTCGACCCAAGGAAGTGGTTCGACACCAGGAATTGGTTCGACACCAGGAAATGGTTCGGCACCAAGAAATGGTCCGACACCAGGAAATGATTCGGTACCAGGAAATGGTTCGACACCAGGAAATGGTTCAACATCAGGAAATGGTTCAACATCAGGAAATGGTTCGCCCACAGGAAATGGTTCGACCGCAGGAAATGGTTCGACCGCAGGAAATGGTTCGGCCGCAGGAAATGATTCGACCTAAGGAAATAGTTCGACCTAAGGAAATGGTTCGACCTAAGGAAATGGTTCGACCTAAGGAAATGGTTCGACCTAAGGAAGTTCCTCGTCCCAAAGAAGTTCCTCGGCCCAAGGAAGTTGCTCGTCCCAAGGATATTCCTAAAGCTAAAACAGATCCTCTGGTTTGTCAAACATGTGGCAAAAAGTACGCAGATGGCCGCTCAGTAGCTGGTCACTCTCTTCGCGTGCATGGAATCTTAACAGAATACCACGAACGATGGTTGGCTCAACAGGAAAATCCCAACGACTACACTGTCGAGGATCTACTGAAAAGACACGCCTGCAATACTTGTGGTAAAAGATACAGTTGCATGAAAAGTTTGCGATTGCACTACTTGCGGGAGCACAATGTCGTCATTCCCTTGTTGCGAGCAGGTCGAAATAGAGGCTCCTTGATTTCAGTGCCAACAAACACAATCACGCACTCGGGTGACATGCTGAAACACATGAACGTTTGCAACATTTGCGGAAAGAAGTACACCAAAAACTGGTATCTGCGTGTACATTCCCTCGAAGTTCACGGCATTCCCATGCCTTACGGCAGAGTGAAGCCAAACTTCACTCCTAATCTGCGGGtgataaagaaagaaattattgaGGAGCCAGAACCTACAAATTACCCCCAAATAGAGGAACAGAAGTTCTCTTCGGTCGTCAACTTTACAACACCATCTCAAAATTATGAAATGGCTGAGAACGGAATGCCTGCGCGAGTAGTGAAGATGTACCAATGCATGGCATGTAAGAAGGAATTTATCTCTATTTCTAAGCTACGGAATCATTCCTTCGCACGCCATGGAATCGTTATACCAAGATTGCGGAAACCATACAGGAAAAGTAATCCGTCGGCTATGAAGGTGGAATTCGATGCGAAGGTTAAGTCAGAGGAATTAAAAAAGACTCAAATTTCGACTCCGAAGCAGGTCAGTTTGGACCGGTACTTTAAAACTCCCCCGAATGCAGGAAGCGTCAGCATGGCCAGTCCGAGTTTACCTCCACCACAACCTGCTCCCATGAAAGAAAAAGTCAAAATGGCTCGTACAAAGGAAATTCCTCCAATTAAAACTGCTCCTCCTCCTGCACCTCCTCCTGCTCCAGCTCCAGTGAAGGTCGTGTCCAATCCTCGTCCGAATGTACAAGTTCCAAAGGTACCAACACAGTTAGTGAAATGCAATTTGTGTGCTCGGACCTGCAAGGACATCAGGAAGCACTACACTGCTTATCATAAGATTCGCTATCCCGAGTCGGTAATGGATGCGCCCTTTTTCAAGGCCGATGCATTGGAAAGCACTGCGACTCCCGTAGCTATTAAAACAGAACTGTCATCACAACCAcaagaaattcaaggacttttacCTAACAGACCCCCGAAGAAGAGAAGACGTAGGTTTGCCTCATTGACGATGAGAAAGAGACGTCGGACTGAGAAGCCTCGACAACTCCAGGAGCCTGGGGTTGAGACTCCAGTGTTACTGAGTCCAGTGATTCAGAGTCCAGTGATCAAGAGTCCTGTCGTGAAGGGTCCTGTGGTCAAGAGCCCTGTGGTCAAGAATCCTGTTGTCAAGAATCCTGTGATCCAAAGTCCTGCTCAGACTTCTGAGATCAAGAACTTTGGAATTGAGAGTCCCAAACCCAAAAAGGTGGTTAGCCCTGTTATGAACCGGTACAAATGTACAGTCTGCTGTGGATATTACGCAAGTCCTAAGAGCTTGAAAATCCACCGGCAGAAACATAGAATGAAGGGTGAGACTAAAGAGAACATTCATCTTATAAAGCATAATTACAAAAATGGGTGGAAGGCACAAGAGAAGAAACTCGACGTTTCGAGTTTCGATGAATCTGCAATGAACATGGATATGGATATCGATGTTGGGAATGACTCCCGAACCTCTTACACTGAAAGCGTTAATCAGTCGTCTAGTTCAGAGTCGAGGGACAGCATTAGAAGATCCACGAGGTCTAGCCTGAACACCTACAGTTTGAGTGAAACTACCTGCGAATGCGGAAGGTCTTTCCGCGATCCTCATACCTTGTTTGTGCACAAGGAGAAGTGCAGAACAGCTCACAGACTCGAGAGGGAGAAGTCGGTTGTTACGAGGTCCAGCAGTGATCGGGATTCCGGGATTGGAATAAGTATTACGATAAAGAAGAAGAATGATTCGTACGAAATCGTCAGCAGGGACAGTGGTGACGATGATAAGTCTAAGGATTCTACTACTTCGAAGGACTTGGATCAGATGTCGAGGTCATCCGATAATTCTTCTCTTCCAGACTTTGGTGAGAGGACTTATCCTGATCTGTTGCCAGCGCAATGCAGTAAGGACCACAGCATCTTAAAGATTCAGGTTGCCGAAGATGACGAGGATGTAGACATCGAGGACGACAGTCAACTAAACGTCACTGAACCCGAACCAATGAACGTAGACCCAGTCGAAGAACCTAAATCTCAGGAAATCGAGAACAGGACACCAGATCCTTTAGATATGGACCTTTACAGGTGTGCAACCTGCCTTGAACTCTTCCAAAAGAAGGAAGACTTAACGAAGCACATGGCCACTCATGAAAAACGTCCCGCTCGTCAAGAATGTCCTTGTGGAAAAACTTTCAGTGGAGCCCAAAGTTTCCTCACCCACGTTCAAGAGTATCATCCTCTCTGGCTTCAGTGTGGCTACTGCGATGTCTCCTTTTTAAATAGTAAAGAATATTCCTCACACACTTGCGATGTCAATCAGGGAAAGGATTTCCATGATCTGCAGGATGTCACCTGCCACTGTTGCCAATCGAAAGTGAAGATGGCCAACTTTGACACTCATGTGAAACGAGAACATTTAGTTCCCCAGGCTCCCTATTTATGTTATTACTGTAAAATGCGATTTTTCAACGGCATTCAAAGAAGAGCACACTTGACTAAAGACCACATCAGACCCTCCTGCAGAATTTGTGGCAAAACATTACGTTTTGACTATGCAGCCAAACATGAAGCTTATCATGACGGGCTTGGTTATCCTTGTCACATTTGCAAAAAAGCTTTTACTACCCCAAAACTTGCGAATAGTCACAAATTCGAGGTTCATGTCAGGGAAGATGAGGAGTGCGAAGTTTGTCACAAACTTATCAGTCATAGACATATGAGATACCATGTGCGAATGCATTCTAGCAGGGACAGTTGTAAAGTTTGTAAGAAGGGCTTCACCAATAATCGCACCTTACAGGATCATATTGATCTGGTTCATGGCAACGATTATCCATTTGTTAAGTGTAACAAATGCGAGCTCTCGTTTACGTCTGAAAGGTATCTCAAGCGACATTATAGTCAAGGTGGATGCAAGAGTTCGGATAATGTGATGGAAACTGAGGAGGCGGAAGAAAGTGATGAGGTTGACAGTAAGGAGAGTGAATCGGAGGATGTGGACGTAACTGAGGAAGAGAAGGAAACTCAGAAGGTGAAGAACATTTCGAAAACGAAAGATGCTTCGGACAAGAAACCTTTGGAGGAGAAAACTGAGGAAAAGGAAGAAACTGAAGATGTGAATGTTACTTCAGATGAGAAAGAATCAGAGGAGGTGAATGTAACAACAGATAAAGAAAGAGAGGAGACGGACAAGTCTGATGTGTCAGAAACTGATGAGGTGAATGTAGCTTCAGATGAGAAAGAAGCAGAAGCACTGGACAAATCTGATGGGGCAGAAACTAGCGAGGTGAATATAACTTCAGATGAGAAAGAAACAGAGGAAACGGACAAATCTGATGTGGCAGAAACTGATGAGGTGCATGTAACTCCAGATGAGAAAGAAGCAGAACTGGACAAATCTGATGTGGCAGAAACTAGTGAGGTGAATTTAACTTCAGATGAGAAGGAAATGGAGCAAGCGGACAAATCTGACGTTGCCGAAACTGAAATAGAAAAAACTGACGATAAAAATGAAGCAGAGATGATGGAAACCGATGAGAGACCAAATGAGGAAGTGAAAGATACTGAGGAACAAATTTCGGAGATGGACGTTTCTTTAGATAAGGAAGGAACTTCGGAGTCCAAAGAAAATTTGGAGACAGAAGAAGAGAATTCGGAGACTCAAGgaaatttggaaaagaaaattcTGGAGACGAAGGAAACCTCGGAGAAAGAGGGTCCGGTGACAAACGGAATTCCAAACGAGAAACAGGTTGAGTCGTAA
Protein Sequence
MMDVRVDNADTYSSQKERYNLKECFIRLEKCDKIWETLKVIKNLQLTDCNEKNTENYEAAFQDAVQNHPKPPTPEPMKYHPVLNNGNAAVPNFQFAIKSWKRLYTCTYCGKQYTENRNLKLHVSKVHGIDPVPKDVPRPKDVPKVPLPIETPRPQEIPRPKEIPRLKEIPRLKELPQLKEIIRPKEVVRHQELVRHQEMVRHQEMVRHQEMIRYQEMVRHQEMVQHQEMVQHQEMVRPQEMVRPQEMVRPQEMVRPQEMIRPKEIVRPKEMVRPKEMVRPKEMVRPKEVPRPKEVPRPKEVARPKDIPKAKTDPLVCQTCGKKYADGRSVAGHSLRVHGILTEYHERWLAQQENPNDYTVEDLLKRHACNTCGKRYSCMKSLRLHYLREHNVVIPLLRAGRNRGSLISVPTNTITHSGDMLKHMNVCNICGKKYTKNWYLRVHSLEVHGIPMPYGRVKPNFTPNLRVIKKEIIEEPEPTNYPQIEEQKFSSVVNFTTPSQNYEMAENGMPARVVKMYQCMACKKEFISISKLRNHSFARHGIVIPRLRKPYRKSNPSAMKVEFDAKVKSEELKKTQISTPKQVSLDRYFKTPPNAGSVSMASPSLPPPQPAPMKEKVKMARTKEIPPIKTAPPPAPPPAPAPVKVVSNPRPNVQVPKVPTQLVKCNLCARTCKDIRKHYTAYHKIRYPESVMDAPFFKADALESTATPVAIKTELSSQPQEIQGLLPNRPPKKRRRRFASLTMRKRRRTEKPRQLQEPGVETPVLLSPVIQSPVIKSPVVKGPVVKSPVVKNPVVKNPVIQSPAQTSEIKNFGIESPKPKKVVSPVMNRYKCTVCCGYYASPKSLKIHRQKHRMKGETKENIHLIKHNYKNGWKAQEKKLDVSSFDESAMNMDMDIDVGNDSRTSYTESVNQSSSSESRDSIRRSTRSSLNTYSLSETTCECGRSFRDPHTLFVHKEKCRTAHRLEREKSVVTRSSSDRDSGIGISITIKKKNDSYEIVSRDSGDDDKSKDSTTSKDLDQMSRSSDNSSLPDFGERTYPDLLPAQCSKDHSILKIQVAEDDEDVDIEDDSQLNVTEPEPMNVDPVEEPKSQEIENRTPDPLDMDLYRCATCLELFQKKEDLTKHMATHEKRPARQECPCGKTFSGAQSFLTHVQEYHPLWLQCGYCDVSFLNSKEYSSHTCDVNQGKDFHDLQDVTCHCCQSKVKMANFDTHVKREHLVPQAPYLCYYCKMRFFNGIQRRAHLTKDHIRPSCRICGKTLRFDYAAKHEAYHDGLGYPCHICKKAFTTPKLANSHKFEVHVREDEECEVCHKLISHRHMRYHVRMHSSRDSCKVCKKGFTNNRTLQDHIDLVHGNDYPFVKCNKCELSFTSERYLKRHYSQGGCKSSDNVMETEEAEESDEVDSKESESEDVDVTEEEKETQKVKNISKTKDASDKKPLEEKTEEKEETEDVNVTSDEKESEEVNVTTDKEREETDKSDVSETDEVNVASDEKEAEALDKSDGAETSEVNITSDEKETEETDKSDVAETDEVHVTPDEKEAELDKSDVAETSEVNLTSDEKEMEQADKSDVAETEIEKTDDKNEAEMMETDERPNEEVKDTEEQISEMDVSLDKEGTSESKENLETEEENSETQGNLEKKILETKETSEKEGPVTNGIPNEKQVES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-