Aque020047.1
Basic Information
- Insect
- Andricus quercuspetiolicola
- Gene Symbol
- -
- Assembly
- GCA_035222095.1
- Location
- JAWWEA010000113.1:47917437-47920136[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00038 0.11 15.1 1.1 2 23 83 105 82 105 0.95 2 11 0.0016 0.49 13.1 3.6 3 23 193 214 192 214 0.96 3 11 0.043 13 8.6 1.3 1 23 263 286 263 286 0.96 4 11 4.8e-05 0.015 17.9 0.6 2 23 335 356 334 356 0.96 5 11 0.0013 0.4 13.4 0.3 2 23 378 400 377 400 0.93 6 11 0.007 2.1 11.1 3.6 2 23 441 463 440 463 0.96 7 11 0.094 29 7.6 4.2 3 23 478 499 476 499 0.92 8 11 0.00014 0.041 16.5 0.1 2 23 544 566 544 566 0.93 9 11 0.037 11 8.9 1.5 1 23 644 666 644 666 0.98 10 11 9.1e-05 0.028 17.1 4.2 2 23 681 703 680 703 0.96 11 11 0.0041 1.2 11.9 0.4 1 23 774 797 774 797 0.98
Sequence Information
- Coding Sequence
- ATGACAGTGGGAGAGAATAATGTAGGAGTCGGACCACTTTATCCGATAGGACAAATTActggaaataatattaaattagaaCCTAATACAAAATCAGAAAGTGGTACTATTGTTCAAATGCCACAATTACAACATATACCACAATTAGCACAGTTACCTCAATTACAACAGCTACCACAATTACAACAGTTGACACAATTGTCGCAATCACCTCAGATGACACAACCACTGCCACCTCCTACCGTTCCCTGTGATATTTGCCATAAAAGGTTCCGAAGCGAGGAATCTGTTTGGAAACACAAACAAAAAGTGCACATAGCTACAGTTATTCAACAGGAAGATCAGAAAAATCTTAATCATCAAATACCACAATCTGATGAGGATAGAGAAATGCATCACCAAAGTCCTGGGGCAATGGAGATGCTCTTCAAACAAGAGTATGGAGTCGAGCAGGAAGATAATTCATTCATGCCCCCACCGAGACATCTTTCCCCTCAAGAAATTCAACAAGCCAAAGAATCTAACTTCAGTGCCGAACGTCTTCGCAAACTAGGAGTTTTAAACCCAGATGCGTTTTGCGAAATCTGTGGTAAGGAATACTGCAACAAATTTACACTACGTATCCATAAGTTGAAGAAACACGGGATAGTTATCCAGGATAACGAAAAACCACCAATCAACCCGGGATCAGCTGCTACTTGGCATCAAGTACAAACCACTCCTTTGAACTTGATCATGAACGAGGGAGGAAGTGGCTCCGAGTACAGCGATAGATCAACTGATGAGCATGAGTGCAAAGCTTGTGGAATTCGTTTCCAGAACTTTGGACTATATGAATCTCATCGTCAAAGGGTTCATGCTGAAGAAACTTCACCTACGGTGGAGTATGAGCCAGAATCTGTGGAACAACGAATTACAAGCAACGATTCTATCTCAGAGGATCTTCAAAAACTTCAAACCATGATTTTACAACTTAATGGTCTTGAAGCCAACAAGGTTACTGTTTGTTCTGTTTGTGGTAAAGAGTGTGACTCCAAAGTAAGTTTAAAAGCTCATATGATGGAGCACGGTATCACAACAGAAGATCCTGTCTCACCATCTCACGAAAAAGCCTCAACACCTATTACCACTTACTGCACATTGTGTGAAAAAGAATACCAAAACCAAGAAGCTCTGAGGAAACATATCTCAGAGGATCACAAACAACATTATAACGATTCGACTTCTTTGTCACATGTACCATCAATATCCATGCCCTCGACTCCAACATCAGGTCAAGCATCTGAACGCAAAACTTCATCTTTAACTCCCACATCCAGTTACTGTGAAATTTGCAACAAGGAACTCTGCAACAAATACTTTATGAAAACCCACATGCAAAGAATGCATGGCATCGAAATTGAAAACGGGGCACAGATCGGTGGAGTAATCTGCAACATCTGCAACAAGGAACTATGCAGCAAGTATTTCTTGCGTGTCCACAAACACAACACTCATGGAATTATCGAAGAAGGCTCGAATCTTGGAAATAAACAAGAAAGCTTTGATTCAACGCATACAGATGATTCAGCTCTTAAACCTGAACAACTTGGTGACTTGAATCACAGATATTTTACGCATTTTACTGAGGTTTGTCCTATTTGTAACAGAAGATTTAGAAGCATCAAATGGCTCAAGGCCCACTTATTGGGTGACCATGGAAAAATGGGGATTGACAAATGGAGGGAATTGGAACAGCAATACCAAGCAGCCCAAAGAACGAACAGACCAGCAGGAACTTCAAGGCCCTCTCACCCAAATTCACATCTGAAGATACCTAATGGTTTCGAATCCTCGCAAACCAAAGTTCCCGACCTGACTGCAACCCTAGGGAGTCAAGTCCTTTCAAATTTATTCGGATCATCGATCGAAGATCAACAATCCAAAAGCTACAGATGCTCCTACTGCAACTTCTCCACAACAGTTCTACCTTTCCTCTTCCTTCATGAAAGATCACACATCAATcctcaagaatcttcaactgaaaatgaaaaattcttacaATGTCCTCTCTGTCCTCAGAGTTTCTCCCAACCAGAACATTTCCACCATCATCTTCTAACTCGTCACCAGTTCCCCAATCTACTTTCCCAGTTCCCAGCACCTATTTTCAACAACCTCAGGCTAGAAGCCTTTGGGGAAAAGAACAGCGAAACAAAAGAGATGGAAATGGAACCCGAGGATCAAAAAAATCCGAGTCCTCCAGCtcagaataattttaatgaaCCCAGTATTCAGAAACAAAATGACACAGCAGTTCAGGTAACACCTGAAGGGGTCTATAAGTGTGCACAATGTGGATATGCGACAGCAAATTTGAATCGCATCAAAAAGCACATTAGAAAAGATCACAAGGCATTCGGAGAACCGACGGAAAGTGTTATTGCTGAGTTAAGCAAAATTCTTAAGGAAGTTGCCAATAAGCATAAAGTTCCTGCGAGTTATGCGATGCCCCAGGACTTGAATTCGAATCCAGAGAAGACCATAATgcaaccttttttgattgaagagcAGCAGTTCTCCCCAAGTCAGGATTGTGGCACAACTGGTGGGGAAGAATCTGGACCTTTGAAACGTTTTGCACCGGCCTTGGTCTACCTGCCAGTTAAGGCAAGAGTCAATGGCTCCCTCACAGCATCTTTCACCTTGAGCCCTGCATAA
- Protein Sequence
- MTVGENNVGVGPLYPIGQITGNNIKLEPNTKSESGTIVQMPQLQHIPQLAQLPQLQQLPQLQQLTQLSQSPQMTQPLPPPTVPCDICHKRFRSEESVWKHKQKVHIATVIQQEDQKNLNHQIPQSDEDREMHHQSPGAMEMLFKQEYGVEQEDNSFMPPPRHLSPQEIQQAKESNFSAERLRKLGVLNPDAFCEICGKEYCNKFTLRIHKLKKHGIVIQDNEKPPINPGSAATWHQVQTTPLNLIMNEGGSGSEYSDRSTDEHECKACGIRFQNFGLYESHRQRVHAEETSPTVEYEPESVEQRITSNDSISEDLQKLQTMILQLNGLEANKVTVCSVCGKECDSKVSLKAHMMEHGITTEDPVSPSHEKASTPITTYCTLCEKEYQNQEALRKHISEDHKQHYNDSTSLSHVPSISMPSTPTSGQASERKTSSLTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICNICNKELCSKYFLRVHKHNTHGIIEEGSNLGNKQESFDSTHTDDSALKPEQLGDLNHRYFTHFTEVCPICNRRFRSIKWLKAHLLGDHGKMGIDKWRELEQQYQAAQRTNRPAGTSRPSHPNSHLKIPNGFESSQTKVPDLTATLGSQVLSNLFGSSIEDQQSKSYRCSYCNFSTTVLPFLFLHERSHINPQESSTENEKFLQCPLCPQSFSQPEHFHHHLLTRHQFPNLLSQFPAPIFNNLRLEAFGEKNSETKEMEMEPEDQKNPSPPAQNNFNEPSIQKQNDTAVQVTPEGVYKCAQCGYATANLNRIKKHIRKDHKAFGEPTESVIAELSKILKEVANKHKVPASYAMPQDLNSNPEKTIMQPFLIEEQQFSPSQDCGTTGGEESGPLKRFAPALVYLPVKARVNGSLTASFTLSPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -