Aque017815.2
Basic Information
- Insect
- Andricus quercuspetiolicola
- Gene Symbol
- -
- Assembly
- GCA_035222095.1
- Location
- JAWWEA010000101.1:44348332-44358951[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.58 1.8e+02 5.1 1.5 1 19 236 254 236 255 0.97 2 19 4.8 1.5e+03 2.2 0.3 3 22 281 300 279 301 0.78 3 19 0.0036 1.1 12.0 1.2 2 23 310 332 309 332 0.95 4 19 0.0012 0.36 13.5 0.3 1 23 335 359 335 359 0.92 5 19 0.37 1.1e+02 5.7 0.8 2 23 383 404 382 404 0.92 6 19 0.00035 0.11 15.2 0.5 1 23 412 435 412 435 0.95 7 19 0.0054 1.7 11.5 2.5 1 22 441 462 441 465 0.91 8 19 0.00038 0.12 15.1 3.7 1 23 550 572 550 572 0.98 9 19 0.0041 1.2 11.9 1.0 1 23 579 602 579 602 0.92 10 19 0.00012 0.038 16.6 3.2 1 23 608 630 608 630 0.98 11 19 9.8e-05 0.03 16.9 0.7 1 23 636 658 636 658 0.98 12 19 0.00015 0.045 16.4 0.9 1 23 664 686 664 686 0.97 13 19 0.11 34 7.3 3.6 1 23 699 721 699 722 0.95 14 19 5.3e-05 0.016 17.8 2.2 1 23 736 759 736 759 0.97 15 19 0.00014 0.043 16.5 0.4 1 23 767 790 767 790 0.97 16 19 5.1e-06 0.0016 21.0 0.5 1 23 796 818 796 818 0.98 17 19 0.00026 0.079 15.6 4.3 1 23 824 846 824 846 0.98 18 19 3.5e-06 0.0011 21.5 0.8 1 23 852 875 852 875 0.98 19 19 0.099 30 7.5 0.2 2 23 882 903 881 903 0.93
Sequence Information
- Coding Sequence
- ATGTTTACAACCTCATCTGTATTTTTAAGGGATGAAACTAGAAGGTTTCCAGTAACAGTGGAGGATGCAAACTTCTTCCTCAAGACAACCCatacttttgaacattttttactcaaattagAAGAAAATCATCTCGACATTGAttcattgttaattaaaataaaagttgaatcaTTTAGAGGGGAAAAGCACGTCGATTCATCGCCTAAATCCCAAGATTTCCAAGTTTGTAGATTGTGTGGTGTTTATACCAccaattcagttgaaattttgaataagaaagatgcagttgcacaaaaaataaattgcattCTACCAATAAATattttcaaagaagatGATGCACCAGTTATTATTTGTAAAAACTGTCGCACAAAAGTCAACGCTCTGAGTGATTTCACGACCCAGTGTTTACAGAATGagcaaaaacttttaaacatagCAACCTCGATATCTTCCACACAAAATGAATCCGTCGAAATTAAGAAAGATACTTCAAAATTACAGTTTAAACAAACATGTCCACATTGTTATGCGAATATACTTATTCCGCAGAATAATCAAtcactcaattttcaaaatgaacttcAGCTTTCATTATGCGATGATAACGCCTCAAATTTAGAAttggaaaatattctaaacgaaGCTATTTCTTTAAACCTAGAATCAGAGAAGCAACATGAAAATGGCAATTTAGGACAATTTACTTGCCAGAAATGCAAGACCGATTCGAGCACTGAGGATGAATTGTGGGAACATTGCCAAAATGATTGTCTTCCAAATAAAGTTACAAGTTTAGAAGAAGTTTCTGATTTTAATGCAgaagataaaataatttgtaagatTTGCAAAACATTGTTTATTCAGAAGGAGAGATATGACTTTCATATGGAGCTGCATGAAAATGgagattttgaagttttaaaatgttccaaatgcaataaagtatttcaaactGAAACCGTCCTCTGGGATCATCATCAGATTGAACATAAGCGTTTTGCATGTGTTGGATGTGAAAGAATATTTAGAAGGAAAGCTAGTTTGGATTATCATTTGAAGACCTCTGGTCATCCAAATgtggaaaatttagaagaggagaaaatcaaaataaccGATTCACCTAAATCAAAACTATTGATAACTTGTGCCAAGTGCGGAGCTCGATATCGTCGTCAGGAAAGATACGAGTTCCACGTCAAGAGACACGAATTAGGACAAATCAACCTATTTATTTGCACAGAATGTGAGAAGGAATTCACGAATGAAAACATGTTATGGGATCATTACCAGTACACGCACAGGAAAACTGAATGTTTCACTTGTTTAACTTGCggcaaactttttcaaaaacagtttcttttaaataaacatcAAATCAAATCTAAACATAAGGGTAGAAAAGAGATAGATGTTGAATCAAAGAGCAAGAATCAAAGtTCTCCAGTGGGCCAAAATAGAGTAAAATCACAAACTAAAGATACCGTCCAACCGAAGTTTTTGGACTGCGTTCTTTGTGGCGGAccagtttcaaattttgatcccgaTTCTCTGAATAACGCAGTAACTTGTGCCAAATGTAAGTCTCCCGGACTCTCTTTACAAGTCGATTCTGATGGTGCCAAGGTCCTTTCACGTCGAGAATATGATTGCAATTTATGCTACAAACATTTTTCGACTAAAGATAGATTAGAGTATCATATAATGCGCCATTCCGAGAATATGGACGAATTTATTTGCAGCACTTGTGGCAAAACACTTAGTACCGAACAGGCACTTTTCGAGCATCATCTTTTCGTTCATAAAGGAGCCAGACCTCATGTCTGTGAACTATGTGGAAAATCTTACCAGTTTCGAACAAGACTGAAGGAACACATGAGAACCCACAGTGGTGAAAGACCTTTTGTCTGCGAGGTTTGCAGCCAGAATTTCATGACAAACAACGCTTTGCGCTCTCACTTGAAAACCCACCTCGAGGATAAGAAATTTCCTTGCCAACTTTGCTCAAAACTTTTTCGACGTCAGCAGGACCTAAACGAACACCTGGAGCGTCactggaaaaatgagaaaatcgtAAACTTATCCAGATTCTTCCACTGTGAAAATTGTTCCGAGTTTTTCCCCACTATCCGCGTTCTCAGAACCCATTTAAAAGAGCATCATGGAGTTGAAAACGGAGACCTAACTGACCTCCATCCTTGGTTCCAGTGCGGAGACTGTCCAGAGAAATTCAAGCATCAGATGTCCTTGAAATCTCATAGAGAAAAAGTCCACAAGGGAAAAACTAAACCGATTTATCGCTGCGATAAGTGTGATGTAATCTATAAAACAGCCAGACTGTTGGCAAGTCACATGAATAATAATCATGGAGGAGAAAAGCGATACAAGTGTGCACAATGTGGAAAAGAATATAATCAATCAAAGTCCTTACAAAGTCATATTTTGATTCACACTGTGGAAAAGCCATTTAATTGTGAAATTTGTGAGATGAGTTTCAGAACCAAGGAGTCTCGGAATCATCACCAGAGGAAGCACACTGGGGAAAAGCCTTACAAGTGTCCAGGATGCGATAAAACTTTTGCCACTGCTGGACAGCGAAGAGAACATAGAAGGAAAACTCATGAAGATGGGAACGAACTGCCTTGTCCTGAGTGTGGTAAGATTTGCTTTGGGGAACGTGGAGTTCGTAGTCATTTGACCATTCACTCGATTGAGAAGCGAAAGATGCTAGCTTTGACTGAATTTATGAAGCTTAAGTCGAAATAA
- Protein Sequence
- MFTTSSVFLRDETRRFPVTVEDANFFLKTTHTFEHFLLKLEENHLDIDSLLIKIKVESFRGEKHVDSSPKSQDFQVCRLCGVYTTNSVEILNKKDAVAQKINCILPINIFKEDDAPVIICKNCRTKVNALSDFTTQCLQNEQKLLNIATSISSTQNESVEIKKDTSKLQFKQTCPHCYANILIPQNNQSLNFQNELQLSLCDDNASNLELENILNEAISLNLESEKQHENGNLGQFTCQKCKTDSSTEDELWEHCQNDCLPNKVTSLEEVSDFNAEDKIICKICKTLFIQKERYDFHMELHENGDFEVLKCSKCNKVFQTETVLWDHHQIEHKRFACVGCERIFRRKASLDYHLKTSGHPNVENLEEEKIKITDSPKSKLLITCAKCGARYRRQERYEFHVKRHELGQINLFICTECEKEFTNENMLWDHYQYTHRKTECFTCLTCGKLFQKQFLLNKHQIKSKHKGRKEIDVESKSKNQSSPVGQNRVKSQTKDTVQPKFLDCVLCGGPVSNFDPDSLNNAVTCAKCKSPGLSLQVDSDGAKVLSRREYDCNLCYKHFSTKDRLEYHIMRHSENMDEFICSTCGKTLSTEQALFEHHLFVHKGARPHVCELCGKSYQFRTRLKEHMRTHSGERPFVCEVCSQNFMTNNALRSHLKTHLEDKKFPCQLCSKLFRRQQDLNEHLERHWKNEKIVNLSRFFHCENCSEFFPTIRVLRTHLKEHHGVENGDLTDLHPWFQCGDCPEKFKHQMSLKSHREKVHKGKTKPIYRCDKCDVIYKTARLLASHMNNNHGGEKRYKCAQCGKEYNQSKSLQSHILIHTVEKPFNCEICEMSFRTKESRNHHQRKHTGEKPYKCPGCDKTFATAGQRREHRRKTHEDGNELPCPECGKICFGERGVRSHLTIHSIEKRKMLALTEFMKLKSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -