Aque003570.1
Basic Information
- Insect
- Andricus quercuspetiolicola
- Gene Symbol
- -
- Assembly
- GCA_035222095.1
- Location
- JAWWEA010000003.1:12421748-12438139[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 9.5e-05 0.029 17.0 0.1 1 23 68 90 68 90 0.98 2 18 0.00011 0.033 16.8 1.0 1 23 101 123 101 123 0.97 3 18 0.00043 0.13 14.9 4.4 1 23 130 152 130 152 0.98 4 18 0.00057 0.17 14.5 1.0 1 23 158 180 158 180 0.97 5 18 0.0002 0.06 16.0 0.6 1 23 186 208 186 208 0.97 6 18 0.00031 0.096 15.4 7.5 1 23 219 241 219 241 0.97 7 18 1.5e-06 0.00045 22.7 1.0 1 23 250 272 250 272 0.99 8 18 2.8e-05 0.0084 18.7 1.7 1 23 278 300 278 300 0.98 9 18 1.6e-05 0.005 19.4 5.3 1 23 306 328 306 328 0.98 10 18 0.022 6.6 9.6 0.0 1 20 494 513 494 514 0.95 11 18 0.059 18 8.2 0.1 2 19 538 555 537 557 0.92 12 18 0.00019 0.059 16.0 0.9 2 23 654 675 653 675 0.96 13 18 2e-06 0.0006 22.3 2.4 1 23 679 701 679 701 0.98 14 18 5e-05 0.015 17.9 1.2 1 23 707 729 707 729 0.97 15 18 0.0001 0.031 16.9 2.2 2 23 736 757 735 757 0.96 16 18 0.075 23 7.9 1.0 2 23 795 815 794 815 0.96 17 18 9.3e-06 0.0029 20.2 1.2 3 23 823 843 822 843 0.97 18 18 3.8e-08 1.1e-05 27.7 1.7 1 23 849 871 849 871 0.99
Sequence Information
- Coding Sequence
- ATGAATGGTTTACTCTATGCGTGTGTGAAGGGACATCGATACTTTGTATCAAAGCTCGACGTGCTGCCACCGCAAAATCATCAGTGTTGCGATGGCAGTAATATGAAAATATATTCGACTGATGCCACTGGAATGCTCATCTCCGAAGAACTCACGAAAGTGGAAACCAATGGCGGAGAAGTTATCCACTCAGAGGCCATCTTTCAATGCACCTTGTGCGGAATTGGATTCGTCTCTGAACAAGAGCTCGCCATTCACCTCAAGTCCCACGAGGAACAAGAAGGTGTTGAGAAGGACCTTTTCGCCTGTGAGCAGTGTGGTCGAAGCTTCAACACAAATACCATTCTCAGGAAGCATCAACAACTCCACACCGGTGAGAAGGTTGTTCACACCTGCGAAACCTGCGGATACAGCAGTGCTCATCGACAGAATCTCCTCAGCCATCAAAGGCGGCACAATCTCGAGTACAAATTCCACTGCGAGATCTGCGGCGCTGGTTTCTACACCCGGAACACTTATCAGGAACATCAACTCGTCCACTCGAAGGAAAAACCTTTCCAATGTGATATCTGCAATGCGACATTCCGATACCGTCAGGGTCTGAGATTGCACGCGAAGCTTCACCAGCCAGACTACGTGCCACCTCAGAAGAAGCATCATTGTGAACTCTGTCACAAAAGGTTCTCCAGGAAGCAGGTGTTACTCGTGCACATGCGTACTCATGGAAATATGGGCCCCCAGAATGAATACGTTTGTCACATTTGTGGAAAAGCAGTTTCCAGCAAGACCTATTTGACCGTGCATGTGAGGAAGCATACTGGTGAAAAACCACATGTCTGTGACCTCTGCCAGAAGGCCTTCATATCGCAGAATTATTTGAGTGTTCATCGAAGAACTCATACAGGCGAGAGACCACACAAATGTACCCACTGTGATAAACGTTTCACGCAGAGGACGACACTTGTTGTGCATTTGCGAGGACATACGGGTGATAGGCCTTATCCTTGCTCGTTCTGTCACAAATCGAATAGAAGTCTAAGATCAAGAGTTCCAGTCGTCCTACAACAGAATATTTTGGGAAGAACTGTGATCATAAAAAGGATCAAATCACAAGCACCAATTTTGTTAAGTAggccaaaaaatatattaataaatcagAGGGAAAAAACTGCACCAAGGATCGATCAAGTTCTGGACCTACAAAATTACATTGTCGTGAAAGCGCCTTTAGAAGAAGTCTACGAAgaagacatttttagaaattttgaagaaattgaagaTAGTGAAGATCCTGAGTATCTTGAAGAAACTGAAGATCCTGAAGCTACTAAAGATACTGCAGGAATCTCTAAATATTTTTGCAACTCCTCTCAAGATTCTGATGATAACCAATATTTTGAAGATGCTGAAAATCCTGAAATTCAAGATCCTGAAGATACTCAACATCTTGCAGATGCCAAAGATAATGTAATTTGCGAGTATGTTTGCGACTCCTGTGATGAGCCTTTCGGCACTAACAATGCTCTCATCGTTCACAAAACAGAGCGATCAATTATAAAAACACGTGCAGTTCTTAAAGACAAGGGGAAAAAGCCAAAGCCTTCAGAAAAGTCCTGTGACACCTGTGATGAGTCTTTCGACACTGACGCTGCTCTAATCGTTCACAAAACAGAGAAATCAATTATCAAAACACGTGCTGCTATTCGGGACAAGACGAAACCAAAGCCTTTAAAAAAGTCCTCGAATGAGTGGTTTTTTGAGCAAAAATCGacaattcaacgaaaaaaagctTATAAACCAAAAGTTAAAcccaaattcaataaaattggagCCAAACCCATGGAAGAAGTCTCAATCGAATCTACCAACGATCCTCAAGAAAAATCAGAATACAACAAACAAACTTCAAGATCCACCAAAAAGCTCAGGGGAAAAACGATGCAAGAAAGCGGTCCCGTCGAATgcaaaatttgcttgaaaaccTTCAAAAAACAAAAGTACCTGAATGTGCACAAAGCGATTCATAATTCGCCATACATTTGCCACATTTGCGGAAGAAGTACAACATCCTCCTACTACCTGAACATGCACATTAGAAGACACAACAAAGAGTTTTCGTTTTTCTGCAAGATTTGTCAGAAAGGGTTTTACCTAAAGGCCAATTTGAAACTGCACATGACGGTGCATTCTGAGAACAAACCTTGTGTCTGCAAAGTATGCAACAAGCCTTTCGGAAACTCGCTTTATTTGAAGAATCACATGAAGCTGCACGAGGAACCGTCTACGAGGAAGAAGTTCAAGTGTGATGTTTGCCCCTTCGAAACTTTTTACAGTTATTGCATCAAAGAACACAGGTGGACTCACACTGGCGAGGGACAAGTTTCCTGTGAATTTTGTGGCAAGATGATGAGAAAACAGTACATGAAAACGCATATCAGAATTCATACGGGCGAGAAACCGGAGATGTGCGAATTTTGCGGAAAAGCCTTCAGCGCCAAGAAGTACTTGATTAAACATCGACGTACACATACAGGAGAAAAACCTTACCAGTGTAAAATTTGTGATAAGAGGTTCACACAGCGCGGTACCTTGACGGCACATCTCAGAAGACACGACcttaaaaagtga
- Protein Sequence
- MNGLLYACVKGHRYFVSKLDVLPPQNHQCCDGSNMKIYSTDATGMLISEELTKVETNGGEVIHSEAIFQCTLCGIGFVSEQELAIHLKSHEEQEGVEKDLFACEQCGRSFNTNTILRKHQQLHTGEKVVHTCETCGYSSAHRQNLLSHQRRHNLEYKFHCEICGAGFYTRNTYQEHQLVHSKEKPFQCDICNATFRYRQGLRLHAKLHQPDYVPPQKKHHCELCHKRFSRKQVLLVHMRTHGNMGPQNEYVCHICGKAVSSKTYLTVHVRKHTGEKPHVCDLCQKAFISQNYLSVHRRTHTGERPHKCTHCDKRFTQRTTLVVHLRGHTGDRPYPCSFCHKSNRSLRSRVPVVLQQNILGRTVIIKRIKSQAPILLSRPKNILINQREKTAPRIDQVLDLQNYIVVKAPLEEVYEEDIFRNFEEIEDSEDPEYLEETEDPEATKDTAGISKYFCNSSQDSDDNQYFEDAENPEIQDPEDTQHLADAKDNVICEYVCDSCDEPFGTNNALIVHKTERSIIKTRAVLKDKGKKPKPSEKSCDTCDESFDTDAALIVHKTEKSIIKTRAAIRDKTKPKPLKKSSNEWFFEQKSTIQRKKAYKPKVKPKFNKIGAKPMEEVSIESTNDPQEKSEYNKQTSRSTKKLRGKTMQESGPVECKICLKTFKKQKYLNVHKAIHNSPYICHICGRSTTSSYYLNMHIRRHNKEFSFFCKICQKGFYLKANLKLHMTVHSENKPCVCKVCNKPFGNSLYLKNHMKLHEEPSTRKKFKCDVCPFETFYSYCIKEHRWTHTGEGQVSCEFCGKMMRKQYMKTHIRIHTGEKPEMCEFCGKAFSAKKYLIKHRRTHTGEKPYQCKICDKRFTQRGTLTAHLRRHDLKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -