Aque004249.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Andricus quercuspetiolicola
Gene Symbol
RpL5
Assembly
GCA_035222095.1
Location
JAWWEA010000003.1:35008923-35020772[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 23 0.011 3.4 10.5 0.3 1 20 75 94 75 96 0.94
2 23 0.00016 0.048 16.3 0.9 1 23 152 175 152 175 0.90
3 23 5.5e-06 0.0017 20.9 4.8 1 23 177 199 177 199 0.98
4 23 0.00071 0.22 14.2 0.3 1 23 205 227 205 227 0.97
5 23 0.00047 0.14 14.8 0.7 1 23 234 256 234 256 0.99
6 23 1.9e-05 0.0057 19.2 0.2 1 23 262 284 262 284 0.97
7 23 0.00089 0.27 13.9 1.5 1 23 290 312 290 312 0.95
8 23 2.6e-06 0.00078 21.9 1.0 1 23 318 340 318 340 0.99
9 23 3.7e-05 0.011 18.3 2.0 1 23 346 368 346 368 0.98
10 23 4.3e-05 0.013 18.1 0.6 3 23 443 463 443 463 0.99
11 23 1.8e-06 0.00056 22.4 2.9 1 23 472 494 472 494 0.98
12 23 0.00058 0.18 14.5 2.8 1 23 500 522 500 522 0.98
13 23 0.0002 0.061 16.0 0.9 1 23 528 551 528 551 0.96
14 23 0.00062 0.19 14.4 3.2 1 23 557 579 557 579 0.98
15 23 9.8e-06 0.003 20.1 0.0 2 23 589 610 589 610 0.98
16 23 1.9e-06 0.00057 22.4 2.3 1 23 616 638 616 638 0.99
17 23 7.7e-05 0.023 17.3 0.1 1 23 644 666 644 666 0.98
18 23 0.0084 2.6 10.9 4.9 1 21 672 692 672 694 0.95
19 23 0.0032 0.98 12.2 3.7 1 23 700 722 700 722 0.93
20 23 0.00037 0.11 15.1 1.2 1 23 729 751 729 751 0.98
21 23 5e-06 0.0015 21.0 1.9 1 23 757 779 757 779 0.97
22 23 2.8e-07 8.6e-05 25.0 1.1 2 23 787 808 786 808 0.98
23 23 0.0019 0.57 12.9 1.8 1 23 814 836 814 836 0.98

Sequence Information

Coding Sequence
ATGGATAACAATGATATCAACACAAAGATGAAGttttcATCAGGGGGCCCAGAAGAAGATTTCACAATAAAATCTGAGTTGCCCGCATATGATTCAGTAGAAGAAAGCTATCTTACAGAAGCagaaaataaattgatgaatctgATTAATGGAGACATTCACGAGCGTCCAGATTATGAAATGGATTCTCTGGAAATGCCTACCATAAAACTTGAAAGTATTCACCGGTGTTACCAGTGTCAAGAAGAATTCGAAACCGCCGAAAGTCTAAGGTACCACATAGGCACCAACACTAAAAATAATCTCATAATGCCCCATGTGAAAAGTGCAAATGTTACTTCCAAATCCTGCGACTTACAGATTCAAATGTCAAACCAATCACAGAAAAAATCCCCACAAAATAAACATAATGATTCAACGTTAAACAAGTTTCTCGACGCAAAGAAAGAATCTTTTGTTTGTAATGTGTGCGGCAGATCTTATAAAACGATGTCTTCTCTGAAACTTCATAATGAGAATAAGCACCACCACAAATGTTCAAATTGTGGAAAAAGATGTAAAACGGCATCTTTGCTTCAAATGCATATGCGTGTTCACACTGACGAAAAGCCTTATGAGTGCGATATTTGTAAGAAAGAATTAAAATACTGGCAGAGTTTAAAGTTGCACGTACAGGCTCATATGGAAGGTGGTAAACCTTACAAGTGTTCTGTTTGTTCAATGGCTTTTCCAAAAGACTACTACTTGAACATGCATATGTTGAAGCACACAGGAGATAAAAAATACGcatgtgaagtttgcaacatgGCCTTCAGGAGAAAGGATGTATTAAAGTCGCATATGCTTGTGCAtcgaaacaaaaaatgttttctgtgcGATGTTTGCAACAAATACTTTGCGAAGTCGACGTATCTAAAAGAGCATAAAAAGATACACATGGAGAGAAATCGCTACGTGTGCAAATTTTGTGGTAAGGGCTTTATTTACGCATTTTATTTAAATACCCATATACGTACTCACACTGGAGAAAAACCTTTCGAATGTGATATATGCCAGAAACGATTCGCTAGACGTTTTAGTGTCACCAAGCACAAAAGGATTCATATGAAAtaTTCATCAAAAGATGAAGAAGACTCATGCAGAGAGGACCCATGGAGCAATATTTTTATCAAGTCAGAGCCTGTCGACTACGAGCCAGATGAAAAAACTCACAGAGAAACGCAAAACAAGCTACACATTCTCTctaatgatattaataataagatttcgaaaaatgaagCAAACTTTTTAGAACTACCTGCAATTCAACTTCAAAAACTAAACTGGTGTAATGAATGTCAAAGAGAGTTCAAAAGTCCCCAAGGTCTGAGCAACCACATACGTACCCACATAGATTATAATGTTAATCGAGTTCATACGTGTCCAGACTGTTCAAAAACCTTTGCGAGATTACAATATTTAAAGTTGCATATGAAAACTCACGCAACAGTTAAACCCTTTGAATGTCAAGTTTGCAAACATAGGTTTTCAAGAAAGGATATTTTAAAGACCCATATGCTCGTCCACGAAAACAAAGAATCATTTGCTTGTGATATGTGCAGCAAAGTTTTTGGGAGGTTGAGTTATTTAAGTGCTCATAAGAAGAGACGGCATTTCAAGACAGGATCccacaaatgtaatttttgtgcaaaaatattcATCAGGCCATGTGATCTTAATCTGCATATGCTTAGTCATTCAGAAGTTAACACTTCCGAATATGAAAAATGTCcagtttgtgcaaaaattttcaCGAGACCTGCCGCTTTAAAGGCTCATATGATAATACACGCAGCCGTAAAACCCTTCGAATGTTCAATTTGCAAGCAGGGCTTCTTCAGGAAATATGATTTGACAACACACATGCGTACTCACGAAAACATAAGACCTTACGTTTGTGACATTTGCTCCAAAGGTTTTGTGAGATTGGGTGCTCTGAAGGACCATAAACTAAGACACATGGATGAAAGGCCTCACAGATGTGAAACCTGTGAAAAAAGGTTTGTTAGCACAACTCTTCTGAATATGCACATGCGTTGTCACACTAGAGAAAAGCCTTTTGAGTGCgatatttgtaagaaaaaatttacaaatcgtCATAATATGAAATTTCACATAGATCTTCACATGACATCTGAAGGATCTTACAATTGTTCAGTTTGTACGCAAACGTTTTTCCAAAAGAAGGTTTTAAAAGTGCATATGCTCATCCATGAAAAGCCAAAATCTTTTGATTGTGAcgtttgtaagaaaatttttacGCGATTGTCTTATCTTAAAGCTCACAAAAGAAGACATTTAATGAATAATCAATCCAACAAGTGTGAAACTTGTGGAAAAAGGTATAGTAGGCTGTCTGATTTAAATAATCATATGCGTATACACACTGAAGATAAAAGTTTCGAGTGCGATACTTGCAAGAAAATATGTCTAAACCGTGGTTCTCTAAAGGCCCATATGCTAACGCACTCACGAGATAAACATATTGAACGCAAACAAGCTTTTGAGAAGTCCCATAATTTTAAATCCAACAAACTGACTGATATTAATGGTAAACATGACGAGTATCCAGATGGGAAAATATGTATCCAGAAAGCAATTTGTGACTCTTTAAATTTGAAGACTGAAATTAAAAGTGAAGTACAAGATCTAGGAGAGAGCAACTTGGTAATCCAAGAAGAGACCCATTTTACAAAAGTGACTTTATTTTCTGTGAAAGAGGAACCTTGTGATTTATTAGATTCAAGTCGGGAAGTAGAAATTGGAAACATAACAGGTTTCGTAAAGGTAGTGAAGAACAAGCAATACTTCAAACGTTATCAGGTCAAGTTCAAGAGGCGTCGTGAAGGTAAAACCGATTACTATGCTCGTAAACGCTTGACCATCCAGGACAAGAACAAATACAATACACCAAAATACAGGTTGATTGTTCGGCTCTCAAACAAGGACATCACTTGtcagGTGGCTTATTCCAGAATTGAGGGAGACAAGATTGTTTGCGCAGCTTACAGCCACGAACTTCCGCAATATGGAGTTAAAGTAGGACTTACAAATTATGCATCAGCCTACTGCACAGGACTACTGCTGGCCAGAAGACTCCTAAAGAAATTGGGATTGGACTCGTTGTACAAAGGCAATACGGAAATCAACGGTGACGAGTATAATGTCGAAGAATTAGACGAAGGTCCAGGAGCATTCAGGTGTTACCTAGACACTGGCCTCATGAGAACCACAACTGGCGCGCGAGTCTTCGGTGCGATGAAGGGCGCTGTCGATGGAGGCCTAAACATCCCCCATAGtactaAGAGATTCCCCGGCTATGACAATGAAGCCAAATCTTTCAACGCCGATGTCCATCGGCAACACATTTTCGCACAGCACGTTGCGAATTACATGCGGACCTTAGAAGAAGAGGATGATGACGCGTTCAAGCGTCAATTCTCCAAATATATCCACAATGGCATCACTGCCGATAGTATTGAGGGAATTTATAAGAAGGCGCATCAAGCAATTCGTGCAGATCCAGAGCATAAGAAGGTCAAGAAAGATACCCCACCAATTAAGAAGCGGTGGAACCGTGCGAAACTCAACCTTTCCGAGAGGAAGAACCGCGTCGCTCAAAAGAAGGCGTCCTTCATTAAGAAACTCCAGGAAAGCGAAGACTAA
Protein Sequence
MDNNDINTKMKFSSGGPEEDFTIKSELPAYDSVEESYLTEAENKLMNLINGDIHERPDYEMDSLEMPTIKLESIHRCYQCQEEFETAESLRYHIGTNTKNNLIMPHVKSANVTSKSCDLQIQMSNQSQKKSPQNKHNDSTLNKFLDAKKESFVCNVCGRSYKTMSSLKLHNENKHHHKCSNCGKRCKTASLLQMHMRVHTDEKPYECDICKKELKYWQSLKLHVQAHMEGGKPYKCSVCSMAFPKDYYLNMHMLKHTGDKKYACEVCNMAFRRKDVLKSHMLVHRNKKCFLCDVCNKYFAKSTYLKEHKKIHMERNRYVCKFCGKGFIYAFYLNTHIRTHTGEKPFECDICQKRFARRFSVTKHKRIHMKYSSKDEEDSCREDPWSNIFIKSEPVDYEPDEKTHRETQNKLHILSNDINNKISKNEANFLELPAIQLQKLNWCNECQREFKSPQGLSNHIRTHIDYNVNRVHTCPDCSKTFARLQYLKLHMKTHATVKPFECQVCKHRFSRKDILKTHMLVHENKESFACDMCSKVFGRLSYLSAHKKRRHFKTGSHKCNFCAKIFIRPCDLNLHMLSHSEVNTSEYEKCPVCAKIFTRPAALKAHMIIHAAVKPFECSICKQGFFRKYDLTTHMRTHENIRPYVCDICSKGFVRLGALKDHKLRHMDERPHRCETCEKRFVSTTLLNMHMRCHTREKPFECDICKKKFTNRHNMKFHIDLHMTSEGSYNCSVCTQTFFQKKVLKVHMLIHEKPKSFDCDVCKKIFTRLSYLKAHKRRHLMNNQSNKCETCGKRYSRLSDLNNHMRIHTEDKSFECDTCKKICLNRGSLKAHMLTHSRDKHIERKQAFEKSHNFKSNKLTDINGKHDEYPDGKICIQKAICDSLNLKTEIKSEVQDLGESNLVIQEETHFTKVTLFSVKEEPCDLLDSSREVEIGNITGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLTIQDKNKYNTPKYRLIVRLSNKDITCQVAYSRIEGDKIVCAAYSHELPQYGVKVGLTNYASAYCTGLLLARRLLKKLGLDSLYKGNTEINGDEYNVEELDEGPGAFRCYLDTGLMRTTTGARVFGAMKGAVDGGLNIPHSTKRFPGYDNEAKSFNADVHRQHIFAQHVANYMRTLEEEDDDAFKRQFSKYIHNGITADSIEGIYKKAHQAIRADPEHKKVKKDTPPIKKRWNRAKLNLSERKNRVAQKKASFIKKLQESED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-