Aque023409.1
Basic Information
- Insect
- Andricus quercuspetiolicola
- Gene Symbol
- Trl
- Assembly
- GCA_035222095.1
- Location
- JAWWEA010000115.1:54909243-54921956[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.043 71 5.4 0.0 2 31 196 224 195 225 0.84 2 4 3.7e-07 0.0006 21.7 0.0 18 39 226 247 221 252 0.81 3 4 0.0016 2.7 10.0 0.0 6 34 267 294 264 300 0.86 4 4 1.1e-11 1.8e-08 36.1 0.1 5 37 326 358 325 361 0.95
Sequence Information
- Coding Sequence
- ATGTCTCAGGTCAGCAACAGTGAACCTGTTAATGAAAGCTACTGTTTTAAATGGGGCGATTACCAGAATCATTTATCTGGAGTTGTTCGACAGCTTCTCGAAGAGGATTGCATGGTCGATGTTACATTGTCTGCAGCTGGGGAACGCATTCACGCTCATCGCATTGTTCTTTGTGCTTGCAGCACTTTATTCAAAgaacttCTCAGTCATGTGACCGACGATCACccaacaataattttaagtgGTGTATCTGCTGAAGATGTCAGAGCAATTGTTGAATTCACATATCAAGGAGAAGCTCATGTTCCTgaagaaaatataagaaatcttTTGGAAGCAGCTCGTTTTCTAAAAATAACTGGTTTGATGGAGtATGATGTTAACGAGTCAAGCGTAAAATCAAAAGATTCAAATGAAGAAAACACTGATTCTTTCACAGAATTAAATGAAATGGAAGAAGAGGTATTTGACGTTCTAGAACAACCTTACGATGACACGAACGAACAGTCGGAACAGAGTGCAACAGAGGAAAGTTCAGGAGTCAAAAAAAGAAAGCGGCGTTTTCCAATGAAAAGGGAATACAGCGAAGATATGCTAGCCGCCGCTATTAATAATTTACGTGAAGGACAGACTTTAATCGAAGCTTCTACCAAAAACAATATCCCTCGTGGATCGAGTTTACAGCAAGCATCAGAAATGTTTGGTATTCCAAAAACTGTCCTCTGGCGACGAATGCAAAAAGAAGGCTACCATATTTTTCGTTCCGAGATGAAAAGGAGTTACGGCTCTGATAAAAGAGAAGCTGCTGTGGAAGCTTTGCAACGCGGAGAAAATCTTACGAAAGTTGCACAACAATATCAAATACCAAAGACAACTCTGTTTAGAGACAAAGCTCGTCTAGTCGACGAAGGCAAATTGCCTACCTCTTTCTGGAAAAAAAGGAAAACTGAAAAcgaatcgattaaaaaattccGACTGGAAGAAGCTGTTGCTGCCTGTAAAAGTGGAAAAATGTCGCAAGCAGCGGCTTCTGTATTATATCATATTCCAAAAACTACGATATGGAGACATAATATCGAAAGCGATGCTCAATTTACATATTGCGAGGTCGCTTCCGAAATCCCAGTGACTTACACAATTGAAGATAATGGCATCTCCGGAGAGCAGCAAGTTATAGTTTTCACGCCAGAAGAGGTCGAAGAACTCAATTTGGATGCGCGTACACAAATCATTATAAGTTCGGATTCAAATCAGGAATTTGTCACCAACTCCACGACCGTCGAAGATGATACTAATTACAGTTCTAATAAAAGTTAA
- Protein Sequence
- MSQVSNSEPVNESYCFKWGDYQNHLSGVVRQLLEEDCMVDVTLSAAGERIHAHRIVLCACSTLFKELLSHVTDDHPTIILSGVSAEDVRAIVEFTYQGEAHVPEENIRNLLEAARFLKITGLMEYDVNESSVKSKDSNEENTDSFTELNEMEEEVFDVLEQPYDDTNEQSEQSATEESSGVKKRKRRFPMKREYSEDMLAAAINNLREGQTLIEASTKNNIPRGSSLQQASEMFGIPKTVLWRRMQKEGYHIFRSEMKRSYGSDKREAAVEALQRGENLTKVAQQYQIPKTTLFRDKARLVDEGKLPTSFWKKRKTENESIKKFRLEEAVAACKSGKMSQAAASVLYHIPKTTIWRHNIESDAQFTYCEVASEIPVTYTIEDNGISGEQQVIVFTPEEVEELNLDARTQIIISSDSNQEFVTNSTTVEDDTNYSSNKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01392906;
- 90% Identity
- iTF_00089715;
- 80% Identity
- iTF_00089715;