Atri015348.1
Basic Information
- Insect
- Andrena trimmerana
- Gene Symbol
- -
- Assembly
- GCA_952773225.1
- Location
- OX731550.1:34185722-34193727[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.082 8.3 7.6 5.8 2 23 8 30 8 30 0.96 2 11 1.8e-05 0.0018 19.1 0.4 1 21 80 100 80 101 0.95 3 11 0.31 32 5.8 0.4 3 23 111 132 109 132 0.95 4 11 0.0024 0.24 12.5 0.2 3 21 216 234 214 235 0.93 5 11 0.00049 0.049 14.6 2.1 1 21 253 273 253 274 0.95 6 11 1.1 1.1e+02 4.1 0.2 5 22 360 377 359 377 0.86 7 11 0.37 38 5.5 0.9 1 23 385 408 385 408 0.92 8 11 1.2e-05 0.0012 19.7 2.4 1 21 450 470 450 471 0.95 9 11 4.4e-05 0.0045 17.9 6.0 1 23 479 502 479 502 0.98 10 11 0.19 19 6.5 0.2 1 16 532 547 532 547 0.96 11 11 0.0007 0.071 14.1 2.1 1 23 561 584 561 585 0.97
Sequence Information
- Coding Sequence
- ATGTATGAGTGCAGACCGCCACGATGTCCGTACTGTCAATATTGTTGCAAGACAGTATTGAACATCTTCAAACACATCCGACAAAAACATCCTAACAAAAGGACCCACTCTTTCCCGTCTAAAACCCAACGGGCGAACCGGACACGTCCGAGTCCGGGGAGGTCCTGCAGCCCGCCCGTTTCCCCGACCGCCGCCACGTCCAGAACCACGGTTTCCCAAGAGCGGAACAAGGTCAGGTTCCCGTGCCCCAAGTGCGCAAACACATTCAGTAGGAAGGACAGTCTCAATAGGCACATCAAGTACCAGTGCGGTCAGCCACCGCGCTTCGGCTGTCCCTATTGCGTGTATCGTGCCAAGAGACGACAGGAAGTCTACAAACACGTGCGCGACAAGCATAATGGCGAAATGGTGTATGACTATGTTTATTATCTCGGTTCTGTTACAGCAGCAGCGTGGAAGAGAGTGAGCAGCTCCAGCTGCCTGACTTTGATCGCGATTCGGAAGACGGACAGAAGCTTCACGGCGAAAACCCGCGCCGGCTGCCGGAGGGCGACAGGGACCAGCTCGCGCAGCATCAGCGACTGCAGGACCGGCAGCCAGTTGCTGGACGTGGCGGACACCAACACGTACAAGCTTCAATCCATCTGCCAGTTCTGTAACAAGGAGTCCTCCAGGCCCAGCAACTTGGCCATGCACGTGAAGAACAACTGTATACAGAATCCAGAGGCCATGTGCAACACCAGCATAATGCATCCGTTCGTGTGCAAAAAGTGCGGGCGCCGATTCAAAGTCAGAAAGGGTCTCACCTACCACGAGAGACATGAGTGCCAGAGGTTCGTCTTCTGCCCCGACTGCAACCAGAAGTTAAAGGGCGCCATCGTTCCAACTCAGCATATCACACGGTGCAAGATGAAGAGGCAGAAGACAGAAGGGGAGAACCTTACTGATGTGTTACTCCCCGTGAAAGACGAGGACCTCCACTCTGAGCTGGTCTTGTTCACCAGCTCCGACAGCAGCTACCAATTCTTTCCCTTCGGTTACCTAACGAGCCAGAAGAGCTCCCAATTCCCCCGTCCGAACTGCGCCAGTATTTTCAATCGGAAGGGCAAGCTGCACCAACACCTGAGGCGCGGGTGCGGCCAGCCACCCTGGTTCAAGTGCCCTTACTGCGAGTATCTGCCGAAGAAAAAGGGCAACGCCCGCACCCACGAGCGCTCCAACCACCGTAGAATATTCACCTTCGTGATCGATTTGAAAACGGATCTGCAGCATCTGGGCGACGTCGAGATACCGGCGTGCAACGCCACCCCGAGGGCCACGGATCCCCAAGAGCGGAACACGGACAGGTTCCCGTGCCCCAAGTGCACTAGGACGTACAAGCGGAAGTACCATCTCCAAGTACATCTCAAGTACGAATGCGGTCAGCCAGCGAGATACCAATGTCCCTATTGTGATCATCGTTACAAGAGACGATCGCACGTTTACAGGCACGTGCGAGTCAAGCATTATGGCGAAATGACCATCTTTTTTTCCTTCGAATACCTAAAGGGCGAACGGGACACGTCCGAGTCCTGGGTCCTGCAGTGCGTCCGATTCCCCTGTCCGACCTGTGCCAACATCTTCAATCGAAAGAGCAACCTGCCGCAGTACCTGAAGTATGAGTGCGGTCAATCGTCCAGGTTCAAGTGCCCTTACTGCGAGTATCCGTCGAAGAAAACGTCCAACATCCGTACCCACATGCTCTCCATCCACCATGGAAGAAGCATCTTCGTGATCGACCTAAACGCGAACAACGCGTAG
- Protein Sequence
- MYECRPPRCPYCQYCCKTVLNIFKHIRQKHPNKRTHSFPSKTQRANRTRPSPGRSCSPPVSPTAATSRTTVSQERNKVRFPCPKCANTFSRKDSLNRHIKYQCGQPPRFGCPYCVYRAKRRQEVYKHVRDKHNGEMVYDYVYYLGSVTAAAWKRVSSSSCLTLIAIRKTDRSFTAKTRAGCRRATGTSSRSISDCRTGSQLLDVADTNTYKLQSICQFCNKESSRPSNLAMHVKNNCIQNPEAMCNTSIMHPFVCKKCGRRFKVRKGLTYHERHECQRFVFCPDCNQKLKGAIVPTQHITRCKMKRQKTEGENLTDVLLPVKDEDLHSELVLFTSSDSSYQFFPFGYLTSQKSSQFPRPNCASIFNRKGKLHQHLRRGCGQPPWFKCPYCEYLPKKKGNARTHERSNHRRIFTFVIDLKTDLQHLGDVEIPACNATPRATDPQERNTDRFPCPKCTRTYKRKYHLQVHLKYECGQPARYQCPYCDHRYKRRSHVYRHVRVKHYGEMTIFFSFEYLKGERDTSESWVLQCVRFPCPTCANIFNRKSNLPQYLKYECGQSSRFKCPYCEYPSKKTSNIRTHMLSIHHGRSIFVIDLNANNA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -