Atri001485.1
Basic Information
- Insect
- Andrena trimmerana
- Gene Symbol
- -
- Assembly
- GCA_952773225.1
- Location
- OX731548.1:9485-12135[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0017 0.17 12.9 3.3 1 23 242 264 242 264 0.98 2 12 0.00031 0.031 15.2 2.3 1 23 269 291 269 291 0.97 3 12 0.00041 0.042 14.8 1.5 3 23 302 322 301 322 0.98 4 12 1.1 1.2e+02 4.0 6.2 1 23 399 421 399 421 0.95 5 12 0.0026 0.26 12.3 1.6 1 22 426 447 426 450 0.90 6 12 1.2e-05 0.0012 19.7 0.6 1 23 489 512 489 512 0.95 7 12 1.2e-05 0.0012 19.6 3.8 1 23 563 585 563 585 0.98 8 12 0.00018 0.018 16.0 4.0 1 23 599 621 599 621 0.96 9 12 0.00017 0.017 16.1 4.7 1 23 627 649 627 649 0.98 10 12 0.0015 0.15 13.1 3.2 1 23 655 677 655 677 0.98 11 12 5.1e-05 0.0052 17.7 6.5 1 23 683 705 683 705 0.98 12 12 0.00025 0.025 15.5 0.3 1 21 711 731 711 732 0.93
Sequence Information
- Coding Sequence
- ATGGAGGCAGAAAATAGAGCGAGAATCCTACTCGATCCTAGCGATCTGTGCCGTATTTGCCTTAAAACGAATCGTAGTAACCACTGCGTTTTCGGTGCCAAGCAAAATGATTTGTCCGAGAAACTCCGTTTGTGCAGCGGCCTGGAGATCACGGAGAGCGATGGTTTGCCAGCCAATATCTGTGCGAAATGTATGATAAGAGTGGACGATGCTCACGAGTTAAGAAAGCAATGCGAGCAATCGGATATCTGGCTGAGGGAGCTGTACGGGAAACTGAGAGCCGAGTGCAATACTAATCAGTTTAAGACCACCAAAGACCAATGTTGCCAGACAGACTATACCTTTACCtccgattttataaaaatggaTACGAATGTAGCTTCTCCGGCGGATCGTAGTAATGTCTCGCCGATTATAGATTGCGATAATAGTGTTGGGTTTATCGAGGAGCGTAGAACAATTACTGAATCTAACCGTGTAGAATACAACGAACCTAATAATCAGCCGAGTAATGCCAATATTAAGTGTAAGCAAATGGGATGTGAGAAAAGGGAGGCATATCGAACAAGGAGAACAACGATGTTCAAGAGAGTGACGTCCATGGAGAATCTGAGAAATCATAAGGAGAGGCAAAGGCAGTACATAAAGAAGAACGCGAATGTTAAGAGGGACATGGAAAACGAGCATTCTGGGAATACTAATGACGCAGAGTCTGGTAATTCTTACAGCTGTCCAAAATGTAATGGATGTTACTCTAGTAAAAAGTATCTGGACAAGCACGTATCTTCTCACAACGAGGAGAAATACACTTGTGATAAGTGTGATAAGCAATTTTTCCAGCTGGACAAACTGGTGAAGCATAGCAAATTGCACAAAGTTAAAGAGAAACTGGAACCGGTATTATGTAGAATATGTAACAAGACTTTTAAGAAAACCGACACTATGGTACGACATTTAAACGTTCATAAAAGGGCGAATCCGAAAGAGGTTCTCTCCATTTTGAAAGAGATTAGGGACAAGAGGAAATTGGAAAATATTGACGAACCTGAAGGCAGAGCTGTGACAAAAGGGGGACgtgtaaataatgaaaatagtacaTTGAAGTCTGAACATGAAAGCTGTGATCCACGTTTATTAAATTCGAATACTGTTACGAGTAAAAAGTCCGGCTCTCCGGATGGTGGAACGCGGGTGCATCGATGCAGATACTGCGACAAATGCTATCTGCACGATAAATTGCTTGAGGAGCATTTGTTGCTGCACATCGAGAAGGGATTCGTTTGTACCGTGTGCAATATGAAATTCTTCCGCCAAGACAGACTAGAGAGCCACAAAAATCGGTATGGTCACAATGAAGATAAGTCTTCTGTAGAACCACAGAAGCCATCCGACGAAAAGTCGGCGATTAAGTTAATAAATAGCTGGATAAGGGAGGAGCTCGACTCGGATAACGAGGAGAAAGGTTTCCCTTGTGTAATTTGTGGGAAATCGTACGATACTAAAAGATCTCTACTGAAGCATCAGCTGAACACGCACAGCTCGCAAGAGGAGGGTTGCGCGAGCTGTGGCGACGCGTGTACCTgcgaggaaaaggaaaaggaaaaggaaaaggaaaaggaaaaggaaaaggaaaaggaaagggaaaaggaaaagaacCAGCAGAAAGCGAGTGAGATGTTGAAATCGTATCGATGCGACGACTGTAATAAATCTTTCGAAACGGAGACGAAATTGCACAGGCACACCAAGATTCACGAACGCGCCAGAGAACAGGAGGATGTGAATTTCAAGCGATTCCTGTGCCATATATGTAGCAAAACGTTTCGGCAGAATACAGGCCTCATGTTCCACATGCGAACGCATACCGGTTATAAGCCTCACGTTTGCAAGTACTGCGGAAGAGGATTCACGTCGAATTCGAACTGCATCAATCACGAGAGGACGCATACCGGCGACAGACCGTTCGTTTGTCACTTTTGCAGCGCAGCCTTCGCCAAATCGTGTACCCTTAAAGCGCACATTACAACGCACACCGGGGAGGCCAACTACCATTGCAAAACTTGCGGGAAATCGTTCCGGAGGCTCAAGTACTTGAAGGAGCACAGATTCACGCATACCGGTGAGAAACCGTACGCATGCAAGATTTGCGGCACGGCGTACAGCCACAACGGCAGTTTATTCGTGCACGAGAAGAAATGTAAGGCTCAGTATCGAAATGCGCAGAACCATTGTCAGTCTGAGACGTCTTCGCCGAGCGTGACTCCCATTATCACAATTCTACCGCAGGCCTATCTGAACGAAGTCATCCTTCCGTTGACCGCGCAGGAAAGCAAAGTCTATGTTAACGACATCCAGAGAATGAATTCTCCTGGTATCGATAGCGTAAGTCCTGTCGGCACGCCGGATTTACATGTCCATCCGACTTCGGACACCTCTGATGTTTCTCTAGCTGTTAAAAACTTCGCTCTCATCGGACATGTGTTTCAATCGTAG
- Protein Sequence
- MEAENRARILLDPSDLCRICLKTNRSNHCVFGAKQNDLSEKLRLCSGLEITESDGLPANICAKCMIRVDDAHELRKQCEQSDIWLRELYGKLRAECNTNQFKTTKDQCCQTDYTFTSDFIKMDTNVASPADRSNVSPIIDCDNSVGFIEERRTITESNRVEYNEPNNQPSNANIKCKQMGCEKREAYRTRRTTMFKRVTSMENLRNHKERQRQYIKKNANVKRDMENEHSGNTNDAESGNSYSCPKCNGCYSSKKYLDKHVSSHNEEKYTCDKCDKQFFQLDKLVKHSKLHKVKEKLEPVLCRICNKTFKKTDTMVRHLNVHKRANPKEVLSILKEIRDKRKLENIDEPEGRAVTKGGRVNNENSTLKSEHESCDPRLLNSNTVTSKKSGSPDGGTRVHRCRYCDKCYLHDKLLEEHLLLHIEKGFVCTVCNMKFFRQDRLESHKNRYGHNEDKSSVEPQKPSDEKSAIKLINSWIREELDSDNEEKGFPCVICGKSYDTKRSLLKHQLNTHSSQEEGCASCGDACTCEEKEKEKEKEKEKEKEKEREKEKNQQKASEMLKSYRCDDCNKSFETETKLHRHTKIHERAREQEDVNFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHNGSLFVHEKKCKAQYRNAQNHCQSETSSPSVTPIITILPQAYLNEVILPLTAQESKVYVNDIQRMNSPGIDSVSPVGTPDLHVHPTSDTSDVSLAVKNFALIGHVFQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00084756;
- 90% Identity
- -
- 80% Identity
- -