Atri007236.1
Basic Information
- Insect
- Andrena trimmerana
- Gene Symbol
- ZFX
- Assembly
- GCA_952773225.1
- Location
- OX731548.1:89429128-89433423[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.4 1.4e+02 3.7 0.1 3 23 15 35 14 35 0.94 2 15 6.5 6.6e+02 1.6 4.2 1 23 876 899 876 899 0.80 3 15 0.0015 0.15 13.1 1.2 3 23 982 1003 980 1003 0.96 4 15 0.0078 0.78 10.8 0.6 2 23 1016 1037 1015 1037 0.97 5 15 1.7e-05 0.0017 19.2 3.1 2 23 1040 1061 1039 1061 0.97 6 15 0.011 1.1 10.3 0.4 1 23 1067 1089 1067 1089 0.95 7 15 2.8e-05 0.0028 18.5 4.5 2 23 1096 1117 1095 1118 0.95 8 15 0.19 19 6.5 1.7 5 23 1131 1149 1130 1149 0.96 9 15 2.5e-05 0.0025 18.7 1.5 3 23 1156 1177 1155 1177 0.97 10 15 0.014 1.4 10.0 0.5 2 23 1193 1213 1192 1213 0.97 11 15 7.5e-05 0.0076 17.2 0.7 1 20 1219 1238 1219 1241 0.92 12 15 9.3e-05 0.0094 16.9 2.7 1 23 1249 1271 1249 1271 0.99 13 15 0.0026 0.26 12.3 3.2 1 23 1277 1299 1277 1299 0.97 14 15 4.7e-06 0.00048 21.0 3.9 1 23 1305 1327 1305 1327 0.99 15 15 0.0016 0.16 13.0 6.3 1 23 1333 1355 1333 1356 0.96
Sequence Information
- Coding Sequence
- ATGGATCTCCTAAGCAATGGATTATCAGGCAGTGCAATGGCTTGTCCAGTATGCACCCTCTATTTGCGCGAGGGTATCAGCTTGCAAAGACATTTGGACACTCATCCGAAGGAACAAGTCATTGAAGCTCTTATCAAAGCTAGTACTACTAATTCTTCGCATTTACAACAAACCCAGTTATTGCCATCCACGCCGTCGACATCTTCATCTGTACAATCGCCGCAGAGCACGCCTCCAGTTGCGCAGAACACTCATCTCTCTGCCCAGTCTCCGTATCCTATAGGACCTGTTTTCGAGTGTCCGCCGATCGGCACCATGATGCCGCCGCAGTTCGCATCGTTTAGTTATCAACAATTTGTAAATAATGGCACTATGATGATACCGCAGTACGCGATGGCCCCACAGGCGAATCAAATGATGCAGATGCTCTATAATCCGTACGGTATGTATCAGCAGCAACAGATGCCAACTGTTCAGATGATCTCACCAGTTGCGACTATACCTAATACAGCTAGAGTCAGGCCAGTGGCTGGTGAAGCAAATGGTAGGACTGCGATCACTGTGTCTGTAAATAATTCCGAGCCAAAACAAATCTTACCTGAGATTCTGCCCGAACCGGAGCAAGAATCCGAGCAAGTGTTACCGGACATTAATCTTCCAGTGTCCCCTCCATCGTTAAACGAGGATGATTGTATGGGGCAGAATGAAGGTGAAACTAGTGCAATTCAAATAGGACACGAAGACCAACAACCCCGTAACTCGGGTGGCGAAGATCAGCATACTATGCAGAACGAGTACAATAGCATTCCAAGACCATTGGCAATCACTTGTAATGTCGCCGATACCGCGGATGATAAAGTTGAGAGCGTACTGCCAGATATCGACGACGGGGAGTCGTTACACGTTGTTAACGCGGATGTTCAATGTAAATCTGTTAATTACGAATCTTCGGATATGCAAGGATACGTGCATAGATACGAGGACGAAGAGCACAACAATAAAGATATTATGCCTGAAGTGTCATCTTTGGTAAAAGAGAACGAAGTCGAAGAAATAACTACCGAAAAAGTTCCTTTTGGAGAAGAAATAAACGCAAGCACTGGTACATCGTCTCAGGCGGCTGTAGGAGGTGTGCTAAAAGAGTCGGCTCAACCTGAAGTAGAACAATTAGAACGTCTTTTAATCACTATTATGGAATCTGAATTTAATAACGGAACGCATAAAGAATCTAACAGCGAAGATGACGGCGCAAAACAGAGTCCACCCCCAGAAAGAGCGGAAAGTGTGATCCAAGAAACAGCAGCCAGTAGTTCCATTGAACACGAAGACAGTTGTAAGTCTGATATAGAGATAAAAGTTACTGAAAGTTCAGAAATTGATGTAGATAGTGATGAAAATAAGAGTTCTTATCTTTCATACCGTTATAAGAACAGTTTATCTGCACCTGCATCGCCAATTACACAAAAGAGACCCCACAGAACCTACTCTGTTTGTTCAGATTTCGGTTCGACCGATAATCTCAATTGTTATCCAGTTGGTTTTGATGCACATGCATTACAGGATGAAGAAGACAATGAGGATGAGAAAAACGAGGCAGAAGACAACTTTGACGAGGCAGATATGGAAATAGAAGAAATACCTAGCCCGCACACACCTTTCGTTAAGTACGGAGAGAATATGGATCACATCAGATCGCATACACCGCTGTCCGTAAGCAGTGGTATTTCTGTGCTGAGAGTTAGAAAGGATCTCAGCAAACCATGCTCACCCGCGTCGGTGCATTCGTTCTGTCATATGGATACTAATAGTTTAAGTCACGACGAAGAGAGTAACGCAGCAATGGACGCATTACCAGAGAAAGATCCTATTAGTTGTTCACCGATCGAGCAGGACATAAAAGCAGATCAGTCGGAGCTCTCTTTATGCGAGAATGTTGAGAAAGAAATGGATGGGAATTCAGCATATCAATCCGTAATCACCGAGCATATGAGCTCGTTTCCTACAATTCATTCGCAACAATCGACATTGGCACACGAACCGTATCATGCACCAAGTAAAAGTCATAATCTTATAAATTTGTCGGAATCTAATGGTATCGCTAGTAGTTCTGACTCTAAGAGTTTCCACTCTTCTAAATCAATTGTACAAAAGCAATCAATGGAACTCCTTAGTTTAAACGAAGATGCCCATGCAGGTCCAATGAATGTTTTTGAATACGATGGGCTTCAGATCTTAGTTCCTAGTACATTTATAAGTGATTCTTCGCAAAAAGCTGTTAGCGCGACCAGTCAGCAATCGATGGCGAGTAGCGAAGGCGGAGTAGGTATAGACGAGGAAGTGAAAAGCATAAACATGAGGGCCGATGAGACTATGCCACCTAGAGGTGAATTATCAGAGCAGGAAAGCAATGGATGTACAGAACAATCTGCTTGGCAGCTGTATGCTGGTCAGGAGTCGTCACGCATGTCAACTTCCTATGACCTGATGGCACGCGAAAGTTGGGAAGAATCGGATGGGTCAGACAATGAGATTGGTGGCCCATTATTGGATAGCAGATCCTTAGCTACCCATTTTACGTCGAGTTTATTCCTAGATCGAGATAGAAAAACTCCAACGAGAAGAACATTTAAATGTTATCATTGCCCAGAGGTATTTGATTGTCCGAAAGAACGGAGAGTACATAGTACTACAACGCACAAAGAAGCTGGACCTAGCAGCAGTAAAGATACTGCAGATCAACCAGAGGTAAAGGATATCAAGTTACTGGACGGCCGCATGAATGTGTTTGAGGATATTTTTGTACCAGGTTTACATGCTCAACAAGCTTATCATCAGCCTCTTTTACATCAACTCCAACCGCCGCAATCATCAGACTTGACTGCGAAAGTAGAGCCCGACGACAAAATGGAAACGTTAGCATTGCCGTCGAAAATCGAGGTAATCTGTATGATGTGCAATCAAAGATTCCCTAGTGAAAAGTCGTTGCAACTGCACCATAGAACAGTACACATTGAGGAAACGACAAAACGAATTCGCGAGAACACTAAATGCCAGATATGCCAGGAAGAGTTCTCTTCGGTTCTATTGTTTAATACCCATCTAAAGGTACATCCATTAGAGTGCAGCCAGTGCGGCAAGTATTTTTATAGAAAGCAAAATTTTAAATTACACATGAAACGGCATCAAGGAATTAAACCATTCCCGTGTAAGGTGTGTGACAAGGCGTTTTTAACGAAACAGAAATTAGACGAGCACACTAACGGCCACACCGGAAACGCGCCCGTGAAATGTAACCTTTGCAATGAAACGTTCCGTAGATATTCAAATCTTACCCAGCACAAGAACAGACATCatttgaatataaaaaagaaattgaaggaCTACATATGCCAATGCGGCGAGATTTTCCATACAAAGAAGAAACTGGCCTGGCATAAAGAAACTCACGATGAGAAGCCAAAAGCGTGTACATATTGTAATGAGAGATTCATTCACATGGCCAGCTTAACCCGACACATGCGTAGAGCTCACAACAGAAGATTTGTTCCAGATGCTCAAAGAGAGGGCGAGAATGTTGAATGTCCCATATGTAAGTGTATTTATTTACGATCTTCCTTGTCAGTGCATATGCGAGTTCATAACGGCGACAAGCCATATGAATGTCAGGTCTGCTCTAAGGCATTCAGTACTAAGTGGAACTTACAATTGCACAAATGGACTCACGCTGCCCGTAGTAGCAAACCTTTCAAGTGTAATCAGTGTAGTGCTGCGTTTTACCGGCACAGCGATTATACCGCTCACATGAATTCTCATAGGAACGTGCGTCCTTATACCTGTAACTATTGCGGAGCCCAATTCATAAGGAAATATAATTGTTTAAGGCATGTCAAAGAGCACGAAGAGAACAAAGCGTACACGTGCGATGTATGCAACAAAACTTTCCACAGATCGTATTATCTGAAAGAACACTTGCGAGTACATTCTGGCGCCAGACCATACACATGTCATATTTGTGGAAAATCTAGCGGTACAAAATCTAATCATAACAAACATGTCAGAATCCATCACGCGCGGGAACCTATAAATACCGAGAATTAA
- Protein Sequence
- MDLLSNGLSGSAMACPVCTLYLREGISLQRHLDTHPKEQVIEALIKASTTNSSHLQQTQLLPSTPSTSSSVQSPQSTPPVAQNTHLSAQSPYPIGPVFECPPIGTMMPPQFASFSYQQFVNNGTMMIPQYAMAPQANQMMQMLYNPYGMYQQQQMPTVQMISPVATIPNTARVRPVAGEANGRTAITVSVNNSEPKQILPEILPEPEQESEQVLPDINLPVSPPSLNEDDCMGQNEGETSAIQIGHEDQQPRNSGGEDQHTMQNEYNSIPRPLAITCNVADTADDKVESVLPDIDDGESLHVVNADVQCKSVNYESSDMQGYVHRYEDEEHNNKDIMPEVSSLVKENEVEEITTEKVPFGEEINASTGTSSQAAVGGVLKESAQPEVEQLERLLITIMESEFNNGTHKESNSEDDGAKQSPPPERAESVIQETAASSSIEHEDSCKSDIEIKVTESSEIDVDSDENKSSYLSYRYKNSLSAPASPITQKRPHRTYSVCSDFGSTDNLNCYPVGFDAHALQDEEDNEDEKNEAEDNFDEADMEIEEIPSPHTPFVKYGENMDHIRSHTPLSVSSGISVLRVRKDLSKPCSPASVHSFCHMDTNSLSHDEESNAAMDALPEKDPISCSPIEQDIKADQSELSLCENVEKEMDGNSAYQSVITEHMSSFPTIHSQQSTLAHEPYHAPSKSHNLINLSESNGIASSSDSKSFHSSKSIVQKQSMELLSLNEDAHAGPMNVFEYDGLQILVPSTFISDSSQKAVSATSQQSMASSEGGVGIDEEVKSINMRADETMPPRGELSEQESNGCTEQSAWQLYAGQESSRMSTSYDLMARESWEESDGSDNEIGGPLLDSRSLATHFTSSLFLDRDRKTPTRRTFKCYHCPEVFDCPKERRVHSTTTHKEAGPSSSKDTADQPEVKDIKLLDGRMNVFEDIFVPGLHAQQAYHQPLLHQLQPPQSSDLTAKVEPDDKMETLALPSKIEVICMMCNQRFPSEKSLQLHHRTVHIEETTKRIRENTKCQICQEEFSSVLLFNTHLKVHPLECSQCGKYFYRKQNFKLHMKRHQGIKPFPCKVCDKAFLTKQKLDEHTNGHTGNAPVKCNLCNETFRRYSNLTQHKNRHHLNIKKKLKDYICQCGEIFHTKKKLAWHKETHDEKPKACTYCNERFIHMASLTRHMRRAHNRRFVPDAQREGENVECPICKCIYLRSSLSVHMRVHNGDKPYECQVCSKAFSTKWNLQLHKWTHAARSSKPFKCNQCSAAFYRHSDYTAHMNSHRNVRPYTCNYCGAQFIRKYNCLRHVKEHEENKAYTCDVCNKTFHRSYYLKEHLRVHSGARPYTCHICGKSSGTKSNHNKHVRIHHAREPINTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00962003;
- 90% Identity
- iTF_00086588;
- 80% Identity
- -