Atri018209.2
Basic Information
- Insect
- Andrena trimmerana
- Gene Symbol
- -
- Assembly
- GCA_952773225.1
- Location
- OX731550.1:80385450-80388215[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 6.4 6.5e+02 1.7 0.8 1 10 317 326 317 339 0.76 2 15 0.024 2.4 9.3 1.7 1 23 347 370 347 370 0.92 3 15 0.015 1.5 10.0 1.9 1 22 376 397 376 400 0.88 4 15 0.097 9.8 7.4 5.3 1 23 482 504 482 504 0.93 5 15 0.0088 0.89 10.7 0.5 1 23 511 534 511 534 0.91 6 15 0.0023 0.23 12.5 4.1 1 23 540 562 540 562 0.97 7 15 0.00018 0.019 16.0 2.4 1 23 568 590 568 590 0.98 8 15 5.3e-06 0.00054 20.8 2.2 1 23 596 618 596 618 0.98 9 15 0.00096 0.097 13.7 0.1 1 23 631 654 631 654 0.95 10 15 0.00026 0.027 15.5 3.3 1 23 670 693 670 693 0.96 11 15 0.00077 0.078 14.0 1.4 1 23 701 724 701 724 0.97 12 15 0.0007 0.071 14.1 0.7 1 23 730 752 730 752 0.97 13 15 0.00066 0.067 14.2 4.4 1 23 758 780 758 780 0.98 14 15 4.5e-06 0.00045 21.0 1.5 1 23 786 809 786 809 0.98 15 15 0.001 0.1 13.6 0.7 2 23 815 836 815 836 0.97
Sequence Information
- Coding Sequence
- ATGGATGCATTAGAGAGTGCATTGATATGTCGTTTATGCGGTATAAATCTTGCGGAGGGAAAGTCCAAAGATATCTTCGAAGGATCCTCCGACTTGATACagaaaataaaagagactttaccAATTCCAATATCTATAGAAGATAATGGTTCGAAGCACGTATGCTTGGCATGTTATGATAAAATTGTCCTTTATCATAAATTTATTCAAGACGTAGTGGAGCATTCTAAGACGTTGGAGAATGTGTCACAAATCAAGTCCTTGATTAATTTGTCTAAAGAGGTGacggaattttcaaaaattcatAGTGACGCTGTATATACATGCCCGAACTGTAACGTAGGCTTAATGATTTTGTTAGTGAGTAATTCACAAGGCTGTGATtataccttccaaatttcactaGCAATGGTAAATCGTTCTGAGAGGAATCATATCACAAAGGAAAAGAATATTCAGATACATAATAATGCAATACCACCGAGTGATCCTAAGAGGAACAACACGCATGTGAAAGATGATAAAGCAACAGGCATGAATGATATTGAGAATATATCTAATCAAATGAATCTTACGCTGCTCGCGTTACAAGATGAAAATGTAAATTATGACGATGTATCGTCTGGTAAAGAAATCTCTGAAATCGGAGTTCTGAGGAAAGCAAAGAGAAAGCACGAGGAATGTAATTCTTCTGATCATCCTGTTACACCAGTAAAGATACTGAAGTTGAAGGAAGTATCATATGTGCCTAATAAGAATTTAGCGCCCAGCGATTACAATTCTGCAGATACGTTAATAAAGCTTGAACCTGAAAATGATAATGCTTATTGTCTAGACAACGACACTGATTGCAAAAGTGAGAAGGATACTTGTACGATTGAATTGCAGGATATATTGGAAATGAATGACGCCCAAGAAGaaaacgatatatataaatcttgCCTGAAGTACGTGTGCAAACTGTGCGGAGCGCGCTATCTATCGCATCTGAAATACGAGTTTCATATGGAGAGACACAAGTCGGGTAAAATATATAAGTACGAATGCACCGTATGCGACAAGGAAGCGAGTAGCGAACACCTATTGTGGGATCATTATTATCATACGCATAAAAGTTTACAACGTTATATTTGCATCGAATGCGGGAAATTGTTTAAGAAGCGATCCAGGCTGAATAGTCACCAAAAGAATTACAAGCATGCTGGTGTGAAACTGATACAAGTCGGTACCAGTGAAGATACTATTAGTAACGACGATATAGAAAAGGCTATAGCGTCAGCGAAGGAAGGAAAGATTTCCGTGAACTGCAGTCTCTGTGGAAAATTGATCTCAGATTTAGATCCGGATGCTATAAATGACTTAGTCACGTGCGCTGATTGCGAAGACTCGACGCTCTCTTTGATGGTGGATGGGAATGAAACGAAAGTAATCTCTCCTAGACAGTATCATTGTTCTAAATGCCCTAAACACTTTGTACGGAAAGAGAGACTGGAGTTTCACGAGATGAGGCATAATGAGAATATGAATGAATTTATTTGCAGTACTTGTGGAAAGGACTTCAGAGCGGAGAATTCTTTGTACGAGCATTATCTTTTCGTTCACAAAGGAGCGAGACCTCATATCTGCGAACTGTGCGGTAAATCATTTCAATTGAAGACCAGATTAAAAGAACACCATCGAATTCACACCGGCGAAAGACCGTACCAGTGCGACATTTGTGGCCAACGGTGTAGAACTACGAACGCTTTGAAGCTCCACAAGAAAGTCCACTCTTCTCATAACAGGTATACTTGCAACGTATGTAACAAATCGTTCAGTAAAAAGCAGAATATGAACGAACATTTAGAGAAGCATTGGAAGAACGACAAAAATGTAACGTTACCGCAATTGTTCACGTGTCCGATTTGTGTAGAAGATTTCCCGACATATCGCATGTTAAAGTATCACATGATAGAAGTTCACGAGATAAATAATCAGGACCCAATTCTGACGAAACAGAAGCCATGGTACGAATGCGCGGAGTGCCATGAGAAGTTCAAGCATCAAATGTCCTTAAAGGCTCATAAAGAGAGAGTTCACGAAGGGAAAGTAAATCCTATTTATCACTGTGACATATGTAACGCCACGTACAGAGTCAAGCAACTTTTAGTAAATCATATTAAAAGTAAACACAACGGCGAAAGGCGTTATAAATGCGCACAATGCGAGAAAGGATTTAACGATACTAAATCTTTATACAACCATGTACTGTTGCATACCGGTAAAAGACCGTTTGTCTGTGAATACTGTAACGCCAGTTTCAGAAGGAAAGATTCCAGAGATCATCACCGCAGGAAGCATACAGGCGAACAGCCTTATCAATGTCCGGACTGTGGCGAATCATTTTCTACATACAACAACAGATCTAAACACCGAAAGCGAGAGCACGGAGAAGGGGACCCAGAGTGCCCTGACTGCGGGGAGAAATGTAGCAATCAACTAGAGATTAGAATTCATTTGAACAAACATCTTGGAGAAAAACTGAAGCAATTGCAAAGCGTAAAATCTGAGGGGGTGTAG
- Protein Sequence
- MDALESALICRLCGINLAEGKSKDIFEGSSDLIQKIKETLPIPISIEDNGSKHVCLACYDKIVLYHKFIQDVVEHSKTLENVSQIKSLINLSKEVTEFSKIHSDAVYTCPNCNVGLMILLVSNSQGCDYTFQISLAMVNRSERNHITKEKNIQIHNNAIPPSDPKRNNTHVKDDKATGMNDIENISNQMNLTLLALQDENVNYDDVSSGKEISEIGVLRKAKRKHEECNSSDHPVTPVKILKLKEVSYVPNKNLAPSDYNSADTLIKLEPENDNAYCLDNDTDCKSEKDTCTIELQDILEMNDAQEENDIYKSCLKYVCKLCGARYLSHLKYEFHMERHKSGKIYKYECTVCDKEASSEHLLWDHYYHTHKSLQRYICIECGKLFKKRSRLNSHQKNYKHAGVKLIQVGTSEDTISNDDIEKAIASAKEGKISVNCSLCGKLISDLDPDAINDLVTCADCEDSTLSLMVDGNETKVISPRQYHCSKCPKHFVRKERLEFHEMRHNENMNEFICSTCGKDFRAENSLYEHYLFVHKGARPHICELCGKSFQLKTRLKEHHRIHTGERPYQCDICGQRCRTTNALKLHKKVHSSHNRYTCNVCNKSFSKKQNMNEHLEKHWKNDKNVTLPQLFTCPICVEDFPTYRMLKYHMIEVHEINNQDPILTKQKPWYECAECHEKFKHQMSLKAHKERVHEGKVNPIYHCDICNATYRVKQLLVNHIKSKHNGERRYKCAQCEKGFNDTKSLYNHVLLHTGKRPFVCEYCNASFRRKDSRDHHRRKHTGEQPYQCPDCGESFSTYNNRSKHRKREHGEGDPECPDCGEKCSNQLEIRIHLNKHLGEKLKQLQSVKSEGV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00084773;
- 90% Identity
- iTF_00084773;
- 80% Identity
- -