Atri018215.1
Basic Information
- Insect
- Andrena trimmerana
- Gene Symbol
- -
- Assembly
- GCA_952773225.1
- Location
- OX731550.1:80635092-80638082[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 2.1 2.1e+02 3.2 0.7 3 20 329 346 327 348 0.91 2 16 4.2 4.2e+02 2.2 0.8 3 20 386 403 385 405 0.86 3 16 0.028 2.8 9.1 5.0 2 23 447 469 446 469 0.96 4 16 0.066 6.7 7.9 0.2 1 23 475 497 475 497 0.90 5 16 3.9e-06 0.00039 21.2 3.4 1 23 503 525 503 525 0.96 6 16 0.0028 0.28 12.2 3.6 1 23 534 556 534 556 0.97 7 16 1.1e-05 0.0011 19.8 2.6 1 23 562 584 562 584 0.98 8 16 2.1e-06 0.00021 22.1 0.5 1 23 589 611 589 611 0.97 9 16 0.11 11 7.2 8.1 1 23 618 640 618 640 0.99 10 16 0.0092 0.93 10.6 1.1 2 23 660 681 659 681 0.96 11 16 0.00046 0.046 14.7 0.4 2 23 689 711 688 711 0.96 12 16 0.0005 0.05 14.6 0.6 1 23 717 739 717 739 0.96 13 16 0.00036 0.036 15.0 3.2 1 23 745 767 745 767 0.98 14 16 1.5e-06 0.00015 22.5 3.7 1 23 773 795 773 795 0.98 15 16 3.1e-06 0.00031 21.5 1.6 1 23 801 823 801 823 0.98 16 16 0.00015 0.015 16.2 0.4 2 23 829 850 828 850 0.96
Sequence Information
- Coding Sequence
- ATGACGGTGGTCTGTGCCGTGAAAAATTGTAAATACTCCTCGGAAAATGAAAACTCGGCGGATATCATTTTCATTCACTTTCCAAACGACGATACATCTAAAATATGGGCGCATCACTGTGGCAGGACGGACCTTTTAATGAAATCGAACGAAGAGCTGCACTTGAATTATTACATATGTTCCCATCATATAGAAGACCGCTATTATATAAGTAAAATAGACCCTGTCATAATAGATCAGCATGCTGTTCCTACATTATTCGAGTCAGATGTTACAACGGAAAAGAATTCGGAGGATATGTTCAGCAGAAGCGAACACGCAGAAGTTGTATTATCGTATTGTGATATGGATACAGAGATAGATCAGTATCGCGACATCGGCATCAGGTTCCCGAATTTGTGCAGAATATGCGGAGAACCGACTCTAGATGGTATAGAAATATTCGCAGGGAAGGGGATTGAATTGAAGCTGAGAGAAAAAATAAGTTTACATCTACCGATAACCATTGATATGGAGGATTTAATGCCACAGAAATTATGTATGGACTGTTATAATAAATTAGAAATTGCACATTCGCTTGTTATAACTTCTCTGCGAACAGATATAAGGCTAAAGAGATTTCTAAATATTAATGACGAACTAAACTATGACAATAAGTACAGTGCTTTAATGAAAGCATGTTCTCCAGAAGTGGCCGAAGAAATATGTACGAGCGAAGCGACTCAAAGTACATCTGTGGAAATATCTTCTAACAAAATCGAAGGCATCATGATGAATCAAAATAGCGTTACGAAATTGAATTGCTTGGAAGATATAGGCGCGCAAAGAAATACCTGCGCGAACAACATGAGGAAGAAAATACAATCCGAATTGAGCTGTCTTATTGAATCCTACAATGAAGAGAACAAAGAAGACGAGTCTGTGAATGCTGCAACAACGAATCAGCCGAACAACGACACAAAAGATAACGATAATGAAATTGCATGTTTTCATTGCAAAGATTTATTTAAGACTCAAGAAATGTTTGAAAATCACAAGATGTTGTGCGACGAAGAGGAGGTAATaatagagaaagagaaagaaaccgATAGCAATATAAACAGCAAACAGTCTAGCGATGTAAAAATAATGACTGTTCAGTTCGTCACAAAGGCATGTGATGTTTGCCACGAACACTTCGAAGGTGATAAACAATTTTCTGAGCATAAACTGTCGTACTGTAAATTCTCCCGAGAACAATACCAAGTTCCGAATAAACCGAGTACATCGGAGAAAGAGTGCAGTATCCAGAAAGATGATGTCGGTAACGATGCATTCACATTAGCGGAAGCTAATAAAAAGTGTGGTCATTGCGAAGCAATTTATTCCACGAAGAAGGAATTATTACACCACATAGCCAAGTGTCACGGAGGTCAATTGTTGTTTAAATGTATCGCGTGTAACAGAAGCTACGAGAAATGGTCTAGCTTGGACGTACACGAGGCTACTCACAGAATAGATAAGCCGTATCTATGCGATCTCTGTGGAAAGAGCTTTAAACACTCTAACAACTTAAGGGGCCACAAGAGGACTCATTTGGACGACTCGAGGAAGAAACGACACGTCTGTGAAATCTGCGGGAATGCATACAGATCTAGATTTCATTTGGGGGAACATATGAACCATCACAATGGAAATAAACCTTACTCGTGCGAAAAGTGCGGGAAAACATTTTACAAGCGGATACAGTTGAGGCAGCACAGGCTATCTCATGGTTCGAATAAACACGTCTGCCCGATATGTGGAGCAGCTTTCAATCGTAAAGGAAATATGAATACGCATCTGAAACGGCATAATAACGGGGATGGGACATACACGTGTAGCGTTTGCTTCTGTAGATGTAAATCAATGAGCGATCTTAAGTTACACAGGAAGAAGCATACAGAGGAGGATATCATGGAGAGCATAAAAAGGAAGTGCATCGGCAAGGCCACATGGCAGTGTAAATGCTGCAGTCGGATGTTCCCGACACGGGCAGCTTTACTGAATCACGAGCGCGTGCATAAAGGGGAAAGAACGAGCGTCGAATGCAACGTTTGCGGGAAACAGCTGGCAAGCAAAAATTCCCTGACATATCACAAGAGATCTATACATTCTACGGAACGGTCGCACATGTGTCAATATTGCGGGGAATCGTTTGTTTCCAAAGAGGCGCGTCTTATACACGAGAGGATACACACCGGGGAGCGGCCGTACGTCTGCAAAATATGTAAAATGGAATACAAGTGTTCCAGCAACTTAAATCAGCACATGAAAATCCATTCCGGCATCAAGCCCCATAAGTGTACGTACTGTAGCAAAAGTTTCACCCGGAAAGGAGCGTTAAATGTGCACAAGAGGATTCACACAGGGGAGAAACCATTCCCCTGCGAGACGTGTGGCAGGACATTCTCGCAGAAAAACGACATGCTGAAGCACACCAAAACCCACGACGCGAAGTCGTTGCGCTGCGAGCAGTGCGACGAGACTTTCACGCGGAAAAAGGATATCTTGAAGCACGTCGCTGTGCACGAGCAGGATAACCCTGTGGTACAGGAATATGTAGAGATGCAACCTTACGATGTAAATATCACGTGCTCTCAATTTGAATAG
- Protein Sequence
- MTVVCAVKNCKYSSENENSADIIFIHFPNDDTSKIWAHHCGRTDLLMKSNEELHLNYYICSHHIEDRYYISKIDPVIIDQHAVPTLFESDVTTEKNSEDMFSRSEHAEVVLSYCDMDTEIDQYRDIGIRFPNLCRICGEPTLDGIEIFAGKGIELKLREKISLHLPITIDMEDLMPQKLCMDCYNKLEIAHSLVITSLRTDIRLKRFLNINDELNYDNKYSALMKACSPEVAEEICTSEATQSTSVEISSNKIEGIMMNQNSVTKLNCLEDIGAQRNTCANNMRKKIQSELSCLIESYNEENKEDESVNAATTNQPNNDTKDNDNEIACFHCKDLFKTQEMFENHKMLCDEEEVIIEKEKETDSNINSKQSSDVKIMTVQFVTKACDVCHEHFEGDKQFSEHKLSYCKFSREQYQVPNKPSTSEKECSIQKDDVGNDAFTLAEANKKCGHCEAIYSTKKELLHHIAKCHGGQLLFKCIACNRSYEKWSSLDVHEATHRIDKPYLCDLCGKSFKHSNNLRGHKRTHLDDSRKKRHVCEICGNAYRSRFHLGEHMNHHNGNKPYSCEKCGKTFYKRIQLRQHRLSHGSNKHVCPICGAAFNRKGNMNTHLKRHNNGDGTYTCSVCFCRCKSMSDLKLHRKKHTEEDIMESIKRKCIGKATWQCKCCSRMFPTRAALLNHERVHKGERTSVECNVCGKQLASKNSLTYHKRSIHSTERSHMCQYCGESFVSKEARLIHERIHTGERPYVCKICKMEYKCSSNLNQHMKIHSGIKPHKCTYCSKSFTRKGALNVHKRIHTGEKPFPCETCGRTFSQKNDMLKHTKTHDAKSLRCEQCDETFTRKKDILKHVAVHEQDNPVVQEYVEMQPYDVNITCSQFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00085626;
- 90% Identity
- iTF_00084606;
- 80% Identity
- iTF_00088875;