Atri022477.1
Basic Information
- Insect
- Andrena trimmerana
- Gene Symbol
- -
- Assembly
- GCA_952773225.1
- Location
- OX731552.1:18750387-18751790[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.2e-08 2.9e-05 24.2 0.0 14 38 6 29 3 32 0.91 2 2 5.6 3.9e+03 -1.8 0.1 16 23 114 122 109 123 0.77
Sequence Information
- Coding Sequence
- ATGAAACTAGTGGATACAGGCATTTCCCTCAGGAAAGCTGCCAATGCATTTGGCGTTCCTGTAACCACATTAGCGAGAAGGAAAAACAATTATAATATAATCAAAAAGAAAACTGGACCACCGACTATTTTAACAGAGGACGAAGAACAAGAAATTGTTAATTGGATTATGTATAAAGCGGAAAGAGGTTATCCAGTCACGAAAACAGAGCTGTTGGATTGTGtacaaaagtatataaaatcGTTAAAAAGGGATACTCCATTTATCGAAAACCGTCCAGGTCGTCACTGGTACGAAGGATTTAGAAAGCGCCATCCAACTTTGTCCATTAGGACGGTACAACACTTGAGTTTAAGTAGAGCTGCTGTCACAAGAGAAGATTTAAGAGAGTGGTTCAATGTGCAAAGAAGTTATTTGAATGGTAAAAATTTGCTGGACATTGCTGCAAATAGAATTTTTAATTGTGACGAAACGAACATATTATTGTGCCCTGATTCGGAAAAAGTGTTAACACTAAAAGGATGTCGCTCAGCGTACAAAATTGCAGATGCAGGGAAAGAAGGTCTCACTGTTCTTTTTATGTACAGTGCAGCTGGTACTCGTGCTCCGCCAATGCTAATGTTTCCTTATGTAGAAAGTGTTCccaaaaaaattatagaaaatacaCCAAACAGCTGGGGCATTGGCATATCGGAGAGTGGATGGATGACGACGGAAACATTTTATGAATATGTGACAAACGTGTTTTATCCGTGGCTTTTAAGGGAAAATATAGAGTTCCCAGTAATAATCTACTTAGACAATCATGCTTCACACATAACTATTCCATTGGTATCCTTCTGCCGGAACAATCAAATTGAAATTATAGGACTTCATCCCAATTCTACTCATATAATGCAACCGCTGGACATAGCCTTCTTCCATCCTTTTAAACAAATGTGGAAAAATACTGTTCCGAAGTGGAAAAATGAAAAGAATGTAATGCGATTGAAGAAAGAAGATTTCCCAAAAGTGTTGAAAACAACACTTGACaacatgaaagatgaaaaaaatattattaaaagtgGATTCAAAGCATCTGGACTAGTGCCGTTTAATCCAAATGCTGTCGATTATGATGTTTtgcaaaagaagaaaaagagtaCAAGTATTTCCACTCCTAATGAGGAAAGTATAACAGAGCATCAAGTTTCCAATAATGGAAATGAGGATGTACTAAAACAGCATTTACAAATATTTGAAAACACTATACCTCCTGAACTATTACTGAGCTTCAAGAATGCTCTGTCAAATGAATCATGGACTGGTGACATCGAAAAGAAAGCACTTTTTGAGTACTGGCTTCAAATTAGACAAACCCCTTTCGGTATAAATACTCATGTTTTCAAAATCAGAAatcattaa
- Protein Sequence
- MKLVDTGISLRKAANAFGVPVTTLARRKNNYNIIKKKTGPPTILTEDEEQEIVNWIMYKAERGYPVTKTELLDCVQKYIKSLKRDTPFIENRPGRHWYEGFRKRHPTLSIRTVQHLSLSRAAVTREDLREWFNVQRSYLNGKNLLDIAANRIFNCDETNILLCPDSEKVLTLKGCRSAYKIADAGKEGLTVLFMYSAAGTRAPPMLMFPYVESVPKKIIENTPNSWGIGISESGWMTTETFYEYVTNVFYPWLLRENIEFPVIIYLDNHASHITIPLVSFCRNNQIEIIGLHPNSTHIMQPLDIAFFHPFKQMWKNTVPKWKNEKNVMRLKKEDFPKVLKTTLDNMKDEKNIIKSGFKASGLVPFNPNAVDYDVLQKKKKSTSISTPNEESITEHQVSNNGNEDVLKQHLQIFENTIPPELLLSFKNALSNESWTGDIEKKALFEYWLQIRQTPFGINTHVFKIRNH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00088720;
- 90% Identity
- iTF_00088720;
- 80% Identity
- iTF_00088720;