Atri012665.1
Basic Information
- Insect
- Andrena trimmerana
- Gene Symbol
- -
- Assembly
- GCA_952773225.1
- Location
- OX731549.1:75374717-75377161[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.9e-09 1.3e-06 28.5 0.0 1 45 12 56 12 56 0.91 2 3 1.2 8.1e+02 0.4 0.0 17 26 280 289 278 292 0.93 3 3 1.5 1e+03 0.0 0.0 2 12 433 443 432 446 0.89
Sequence Information
- Coding Sequence
- ATGCCTCCTAGCAAGGGCTCCTTTAGAAATTATTCTGAAGAGACGATGAAGGCAGCCGTTGAAGATGTTCGGTTGCACAAAACACCAATAAGGGCAGCAGCACGTAAATTTGGCGTACCAAGGATAACCCTTAAATACAAAGTGGAAGGTAAATCGCCTGCGCAGAGAAAGATGGGACCTCCTCCAATTTTAAATCAAGCTGAAGAGAATGAGATCTGTCAGTGGATTGAAAAAATGGCTGCAGCTGGTTTCCCAATTATGATCGAAGAACTTGTAACTAGCGTGGAACGTATTATCAAAGAAGTGAAACGTCAAAACCCGTATAAAAATGATCGTCTTGGTAGTACCTGGGTCAATCCAAATGAAAAGGAGTGTGTTACGGTATTGTTGACGGGCAGCGCCAGTGGTATAGTTGCTCCTACAGTAGTTTTGTTCAAATACAAACGTATACCCCAAGAAATTGCTGACAATTTTCCCCAAAAATGGAGCCTGGGTAAAAGTGACTCAGCTGAGGAACCTCTAAACGACAACACAAATCCAACAGTGTTGCTTCCCGATAATAATACTCAAGCTGAGGACCCAGCCAACGCGGTCACAATTCCACCAAACTCGCTCCTTGATGATACAACCCCAGCTGAAGAATCCTTGAATAATGACGTTATTTCAGCAGTGCCGATTCTGGAAGATGAAAACCGTACAACTGAGCAACCCGCCAACGATGACACGATTCCATCACTGCTGCTCCACAATGTTAACAGTTCTGTTGAGGAAGCTTCAAATAATGTCACCCCTCAAGCTATACTGCTTCAAAACGACCTAACTACCCAAGCTGCTATGCTATCTCAAAGGAAACTTTGTCAAGAATATTTCCTGaacaaaataaagaaaaaagaagagatGGAACGATTAAAAACAGAGCACGCAGCAGAAAGGCAAATGAAGAAGGAGGAAAAGCAGAGAGctaaacaagacaagacacgtCAACCGAAATTGAAAAGAGCAAAGAAAGTCTTACAATTTTCTTCTGAGAGTTCAAACTCCAGTTGTGAAATGTTCGATTTTGTTGTAGAAAGTGAAGGAAATGAAGAGGTCAACGAAGAAAACGAACTGTTAAACAACAATAAAGGACCTGCCTGGCTGCCTTTTCAAAAAGTTGTGAACGAAcacgaaatatttttatatgaaGGAAAACATTTCCCTGGAAAAATTCTTCGTGTAACTAAAACTAAAGCGACTATTTCATCCATGGAAATGTACGGGCGATTATGCAAGTGGCCGGAGAAGCCTGATGTTCTGGACGACGAGTTGAAGGCTGCACTTTTTCATATCAATGAGCCCACGAAAGCGAGCAGAACTCGCAACGTCTACCCTGTTCCTGAATTGAACTTTTTATGGAATTga
- Protein Sequence
- MPPSKGSFRNYSEETMKAAVEDVRLHKTPIRAAARKFGVPRITLKYKVEGKSPAQRKMGPPPILNQAEENEICQWIEKMAAAGFPIMIEELVTSVERIIKEVKRQNPYKNDRLGSTWVNPNEKECVTVLLTGSASGIVAPTVVLFKYKRIPQEIADNFPQKWSLGKSDSAEEPLNDNTNPTVLLPDNNTQAEDPANAVTIPPNSLLDDTTPAEESLNNDVISAVPILEDENRTTEQPANDDTIPSLLLHNVNSSVEEASNNVTPQAILLQNDLTTQAAMLSQRKLCQEYFLNKIKKKEEMERLKTEHAAERQMKKEEKQRAKQDKTRQPKLKRAKKVLQFSSESSNSSCEMFDFVVESEGNEEVNEENELLNNNKGPAWLPFQKVVNEHEIFLYEGKHFPGKILRVTKTKATISSMEMYGRLCKWPEKPDVLDDELKAALFHINEPTKASRTRNVYPVPELNFLWN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -