Apra026913.1
Basic Information
- Insect
- Andrena praecox
- Gene Symbol
- -
- Assembly
- GCA_963932275.1
- Location
- OZ010731.1:44673716-44674162[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4e-07 0.0002 22.0 0.0 1 29 59 86 59 92 0.95
Sequence Information
- Coding Sequence
- ATGGTAGATACTAGGAACTGTAATAAAACCAAAAGAGATAGGACAAAGGTTAAAAAAAATCTCAACAGTGCTGTGAAGAGAACCGCCAACACTCTTAAGTTCAAAAAGAAGCCTACCGTCTTAGTGAGTAAGTCAAATAATGATAAAAAGAAGAAAACTAAGAGAATCCAGTATTCTCCTGAAGATCTTGAGAAAGCTATTAAGCTACTGGATACAGGCATTTCCCTCAGGAAAGCTGCCAATGCATTTGGCGTTCCTGTAACGCTGCCCACAAAATATTTACCTAAAAAAAAGAGGGTGAAGGTCGAAGGTTCGGAGAAGCCGAAACCGCCAGCGGCTGCAACCTCCGATGCCTGGTGGCAAGAGCAGCTCcagaaggaagagaaagaaaaaataaaacaagacaaaattgccaaaaagaaaaatctgcaCGAAGAAAAAGACTAA
- Protein Sequence
- MVDTRNCNKTKRDRTKVKKNLNSAVKRTANTLKFKKKPTVLVSKSNNDKKKKTKRIQYSPEDLEKAIKLLDTGISLRKAANAFGVPVTLPTKYLPKKKRVKVEGSEKPKPPAAATSDAWWQEQLQKEEKEKIKQDKIAKKKNLHEEKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00087911;
- 90% Identity
- iTF_00087909; iTF_00087911; iTF_00087912; iTF_00087913;
- 80% Identity
- -