Apra016406.1
Basic Information
- Insect
- Andrena praecox
- Gene Symbol
- -
- Assembly
- GCA_963932275.1
- Location
- OZ010729.1:11031973-11034863[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-08 1.1e-05 26.1 0.0 2 42 12 52 11 55 0.90 2 2 7.1 3.6e+03 -1.2 0.0 21 34 134 147 131 150 0.76
Sequence Information
- Coding Sequence
- ATGACGACAAGGCGAAAGTACGGGAAATGGAATGAAGACGAACTACAAAAGGCCATTATAGCTTACGAAAACGGTGACTATGGTTTGAATGAGTGTAGTAGGGTGTATGGAGTGCCAAAAGCCACACTGAAGCGACATTCCGCGAAAAAAAACTCATATGCGAATGGTATAAAGGCTCTGGGGAAGCCACCCACGTTCTCTTTAAATCTGGAGAATACTTTATCGGACTACATTCTAACATTAGAAGAATGCTTTTTTGGATTAACAATTAAAGATGTGCGAGAACTCGAATTCCCCATGCATTCAATACGGAGAAAAAGATGgcagggacttctaccgaaactgaaaataccgACACCGGCGTCGAAGCTACCGCGCGACTGTCCTGGCAGCGAGCAGACCGCGGCAAGGAAATTTCACATGAGCCCAGCGACATTAGTAGCGGCGAAAGGAGACCAGGATATCGCCTGTGTGTGGAGGATCAGCGTAGCCGGAGAGCTGGCAGCGACGATGCTGGCGGGGAGCAGCCACGGCGTCGCTGTGTCGCCGCTAATGAGCGAGACTTCCAGACACCCCTTGCGTACAGCCACCGCCGCCCATCGACCCGACTGA
- Protein Sequence
- MTTRRKYGKWNEDELQKAIIAYENGDYGLNECSRVYGVPKATLKRHSAKKNSYANGIKALGKPPTFSLNLENTLSDYILTLEECFFGLTIKDVRELEFPMHSIRRKRWQGLLPKLKIPTPASKLPRDCPGSEQTAARKFHMSPATLVAAKGDQDIACVWRISVAGELAATMLAGSSHGVAVSPLMSETSRHPLRTATAAHRPD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -