Apra032059.2
Basic Information
- Insect
- Andrena praecox
- Gene Symbol
- -
- Assembly
- GCA_963932275.1
- Location
- OZ010733.1:31896706-31898574[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.3e-08 3.7e-05 24.4 0.0 4 41 20 57 19 60 0.92 2 2 1.4 7e+02 1.1 0.0 12 22 130 140 128 143 0.91
Sequence Information
- Coding Sequence
- ATGCCAACCATATACGTCCGAAAATCAGGATCAGTTAGAGGACAATggacgatacaaaatttaacGGAAGCCATTAGAAGAATTGGAAACGGAGAACTTCGAGCCAGTGAAGCTTCTCGATATTATGGGATACCTCCCACAAGTCTCCGGCGAAGGAGGCAGAcaaataattttgataagatatCGCTTGGCCCCCAAGGAATTCTGGGATGCAACAACGAAAAAAGACTAGTTGCACACATTCAACGTCTTCAGGAAGCGGGTTTTGCTCCCGATAGGACAACAGTCAGGCGTACAGCATTTGAATTCGCTGAAATATTAGGGATCCAGCATAAATTCAATAGGGAATCTCGATTAGCAGGATATGATTGGCTTACATCCTTTTTGATCAGGAATAAGGAACTATCCATCAGACAGGCCGAAGGCTTGTCACTAGCTCGGGCTACGGGAATGAATAAAAAAGAAGTAGGAGATTTTTTCAAATTGCTCACTAAAGTATATGATGAGCATAATTTTTACATAAATCCAGGAAACATATTCAATGTCGACGAAACCGGTTGCCAATTGAATAACAATCCTGGAGAAGTAATAGCTATTAAAGGGTCAAAAGACATACATTGTTTGACTTCGGGTGAAAGAGGGGAAAACGTCTCAGTCATAGCATGTTGCAATGCTGAGGGCGTTTTCCTTCCCCCTGCACTCATAATAAAAGGGGTAAGAGAAATTTCGGGAATAGAAATTGGGCTTCCTACAGGTTCAAAAATATACATGAATCGAAAGTCGTCGTACAACTCGTCAGAAATATTTTACCAGTGGTTGGTAGAGCACTTCACGCCACGGAAACCACCTGGCAAAGTACTCCTCATAATGGATGGACATTCTTCCCATCAAAGTTGCATAGAAATGCTCGATTTTGCTGCTGCCAATGATATCATTTTAGTGTGCTTACCTAGTCATACGACACAAGCACTTCAGCCTCTGGACAGATCCTTTTTCAAGCCTTTTAAGACTTTTTATAAAAAACAAACACAAGCGTGGATGAATATCCAtcaaaaacaaattaaaaaagtaCATGCTGGCACTCTCATCGGGAATGCATGGGCAAAAAGTGCTACATTGGACAATGCTGTCAATGGCTTCAAAGCAACTGGAATATTCCCTCTGGATGAAACTGTGATTCCAGAGCATTTCTTTAACATTGCCCAGTCATCTGCAGTTACAGCTTCTTCTCAACTAGAAGCAGTAAATGTATCAGAAAGCCAGCCACTTATTCAACAAATTGCTAGCATTGAAATTCCTTCATGCAGCAAAAATTTTGTAAGTACTAAAAAGACATCTCATAATACGAGCCCCTCAAGACATCTGCACAAAATCAGCCCAGTACCAAAATTGGAACAGCAGGGGGAAAATCGACGGAAGCTATCTGCTAGGATTCTTGATAAAGAATTTATAGAAAAGAAGAAACAAGTAATTAAAAGAAAATCGATTGAGggtaaaaataaaattgaagccACAAAAAAATCAACGAAAAAGAAGCAGAAAAtacaaataaaagttgaaaatcCAGTAGATGATCTTCGAGAGAATCCTCTTGAACCCTCATTACAAAACGAAGAAGATTATTGCCTAGaatgttttgaaaattatttcaaaaCAACTAAAAAGGTTGACTGGCTAAGATGCATTATCTGCAATAATTGGATGCACGAAACATGTACAATGTATGGTGATATATGTAATAGTTGCGGTCGAATAGAAGAATTCAATGCCCACAATAAAGGGAAAAAATGA
- Protein Sequence
- MPTIYVRKSGSVRGQWTIQNLTEAIRRIGNGELRASEASRYYGIPPTSLRRRRQTNNFDKISLGPQGILGCNNEKRLVAHIQRLQEAGFAPDRTTVRRTAFEFAEILGIQHKFNRESRLAGYDWLTSFLIRNKELSIRQAEGLSLARATGMNKKEVGDFFKLLTKVYDEHNFYINPGNIFNVDETGCQLNNNPGEVIAIKGSKDIHCLTSGERGENVSVIACCNAEGVFLPPALIIKGVREISGIEIGLPTGSKIYMNRKSSYNSSEIFYQWLVEHFTPRKPPGKVLLIMDGHSSHQSCIEMLDFAAANDIILVCLPSHTTQALQPLDRSFFKPFKTFYKKQTQAWMNIHQKQIKKVHAGTLIGNAWAKSATLDNAVNGFKATGIFPLDETVIPEHFFNIAQSSAVTASSQLEAVNVSESQPLIQQIASIEIPSCSKNFVSTKKTSHNTSPSRHLHKISPVPKLEQQGENRRKLSARILDKEFIEKKKQVIKRKSIEGKNKIEATKKSTKKKQKIQIKVENPVDDLRENPLEPSLQNEEDYCLECFENYFKTTKKVDWLRCIICNNWMHETCTMYGDICNSCGRIEEFNAHNKGKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -