Apra019308.1
Basic Information
- Insect
- Andrena praecox
- Gene Symbol
- -
- Assembly
- GCA_963932275.1
- Location
- OZ010729.1:45357902-45358759[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-13 6.9e-11 42.7 0.0 2 43 13 54 12 55 0.94
Sequence Information
- Coding Sequence
- ATGGCAACGTCGAAGAagctaaataaaaaatatcagcCTGATGATATGAGGAAGGCCTTAGAAGATATTAAAGAAAACCAAGTGTCTGTGCGAGCAGCGAGCAGGAAATATAATGTGCCATTTTCGACATTATGGTCCAAATATAATGGTAGATATCCCGTTGATGCAAGACCAGGTCCAGCGACAATTTTAACAAGCGAGGAAGAGCAGTTATTAGTCCAGTGGATCTTACATTTAAGTGCCACAGGGTTTTGCGTTGATATGGAGCAATTACTAAATAGTGTACAAAAATTAGTACGAGATGGTAAAAGGGAAACACCATTCAGGGATGGCAGACCATTAAAGCACTGGTATAACGCTTTTCTCAATCGTCATCCAGAGATATGTGTGAGGATGTCCCAAAATATAACAGCAAGAAGAGCTGATTTATCAGAAGAAGCGCTACGTGCTTGGTTCAAAGAGATTGAAGCATATTTAGCTTCAAAAAATCTCTTGGATATAGCGCCATCTAGAATTTTTAATTGCGACGAGTCAGCATTTCTACTTAACCCGCAACCAAAGAAGGTTCTCACAGCCAAAAATAAAACAAGTGCTTATACTCGTATTACGACGGAAGAAAAAGAATGTTTAACTGTTCTAATAGCGGGAAATGCAGAAGGTCAGTTGGCTCCACCAATGATTTTGTACCCGTATGAAAGGATCCCTGGTAGCATTGCAGCTGCTGCACCACCAGGTTGGTCCCTGGGTCATTCAAAATCTGGGTGGATGACGCAAGAGAGTTTTTATGAGTACATTACAAGCAACTTTTATCAATGGTGTCTAGACACCAACATACAATTTCCCACTTATCACACTTAA
- Protein Sequence
- MATSKKLNKKYQPDDMRKALEDIKENQVSVRAASRKYNVPFSTLWSKYNGRYPVDARPGPATILTSEEEQLLVQWILHLSATGFCVDMEQLLNSVQKLVRDGKRETPFRDGRPLKHWYNAFLNRHPEICVRMSQNITARRADLSEEALRAWFKEIEAYLASKNLLDIAPSRIFNCDESAFLLNPQPKKVLTAKNKTSAYTRITTEEKECLTVLIAGNAEGQLAPPMILYPYERIPGSIAAAAPPGWSLGHSKSGWMTQESFYEYITSNFYQWCLDTNIQFPTYHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00085240;
- 90% Identity
- iTF_00088706;
- 80% Identity
- -