Amar004196.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Andrena marginata
Gene Symbol
-
Assembly
GCA_963932335.1
Location
OZ010660.1:7111629-7114988[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.45 37 5.3 1.6 1 23 594 617 594 617 0.98
2 9 0.00015 0.013 16.2 0.6 1 23 623 645 623 645 0.97
3 9 0.024 2 9.3 1.4 1 23 651 673 651 673 0.98
4 9 9.5e-06 0.00078 20.1 0.3 2 23 680 701 679 701 0.96
5 9 0.11 8.6 7.3 0.7 3 23 709 730 707 730 0.95
6 9 7.2e-05 0.0059 17.3 2.8 1 23 734 756 734 756 0.98
7 9 0.019 1.5 9.7 0.6 1 23 761 783 761 783 0.98
8 9 1.8e-07 1.5e-05 25.5 0.5 1 23 789 811 789 811 0.98
9 9 0.00067 0.055 14.2 1.7 1 21 816 836 816 837 0.94

Sequence Information

Coding Sequence
ATGTTAGAGAACTTTGAAATCGGGGTTGAAATATCTGTCAGCTACTTCGAAGCCAAGATAGAAGAGAACGATGGACTGCCGCAGAATGTTTGTATGCGATGTTTGGGAACATTGGAATTTCTGTGCGACTTCTACGAGCAGTGTCACCTCACCCAAAAGGAGTTTAAGCAGGCTAGGAAAAATGAGTCCGAGCAGTTCCAACGAGACAGCGACGCCGAATCCGACAAGGAGAACACCTTCCCATCGACGAACGACGTGAAGCGGAAAGCGAAACCCTTATCGCCTGTTCATTCGAAAAGTACAAAAAATGGTTTGACCCTTGCGTCGTACTGCAAAGTCGAAAGTAAAGATGGAATTAGTAGTCCTCGTCGCCTAGATAACACTGATTGTAGTAATGAAGTTCAGTCAGCTGCGGATAGGACAGTACAAGTGAACAGTAGTCTCGTTCCCAAGAAACAATCCGCGTTGGATCATATCGTTGTGCATGGGAATCATTCGAAGAACGAACAGCGCGGTAGCAGCAGTTTGAAATGCAGAAGAAGTCTGATGCCAGAAAAAGTAGACGCTCCGAAGGCGACTGTAATTCGTACCGCGAGATCAGAATCTATGAGCGATtcgataaattcaatttttaagaGTATTAGCGATGGTGATATGAAATCAGAGCTCCCTGCACGCCGCAAACGGGGCAGGAAGAGTAAGTTAGAGAAGATGAAAGAAGCTGGCTTGCCTTTAGTTATAAAAAGGAAGGTGCAAAGTAATTTAGATGACAATAAAACTAACGATAATCAATATAAGAGACATTGCCTGCGTGCAATCTTTACGAATAATAAGTCAAAGACACCCAACAGTGCTGTGATTTCATCCAAAGCCGAAGTCGAGAAAGTAGTAGTAGTAGATACGATGTTAAGCGATTCTCACGGCAAAAGTAACAAAGATAAGAAGAACAACATTGTGTGCAACAATGGCCCCATATTCGACAGCTCGATGGAAGCTAAAGCCAAGGAAGAAGATTCcccgaagaagaaggaagagaatTCCGTGACCTGCAAAGCGATATCGGTTATCGTGAAGCAGGAGAAAGTAGAGACTGAGGGTGCACCCCACCAACGAACTGGTAAATCGAATCAGATCGTTTGGATCCCTAACGAGATGCTTACACAGGAGCCAGAATGTCTAAGTCGTAAGGTGCAACAGCACACGGAATCGTCCCCTGTGGTTCCTTCATTGAGTAACGAAACGAAACGGACTGAAAGCAGCCAGAGCAATTCCATAGTACAATCTGACGTCTCGGAGGATTCTGACGTTTCCGCCAGCACCGATCGCGAGGACCTGGGACCAAAAATGTTCGCGAAGCAGAACCGCGTGACTGTTATAAAATCCTCGCAGACCAAAGAAATCAGCATTGGCGAGACGATAGAGAAGGATTCTAGAAAGTCGAACGACGCAGCTGAGATGGATGATAGTGCGCGAGATGATTTGAATCACGACGCCGCCGAATTGCCGTCGTCGCGGCGTCCCAGGCGAAACAGCAGTCTCGTCGAAAGCAAGAGTAGGGACAGATCATTTGGTAAAGTCTCCGAATTGATCAGCGACGAACAGAAGCAAGTTATTGAAACATACTACACGGTTGACATGTCGATCGTCAACTCGAAAGAGGTGCAGGAGAATTTAACGATAATAGATAAGAAGAATATACGCTGCAATATCTGCGGCACGCTTTACCTCAGGATGGATAAGTGTCAGGTGCATATTTGGGGGCACTTACAAATGAAACCATATCAGTGCAAGGCATGCGACTTCGCGACAGTAACAGTTAGTAATGTTCGGTGTCATATTAGGAAGAGCCACTTGAAGATTAAACCTTTTGCGTGCCACCTTTGCGAGAAGAGATACGTGACCTCGGCCCTGCTGGACGAACATATTAATACTCATACAGGTGAACGCCCGTTTAAATGTAAACTCTGTGATTTCGCAAGCGCGAGCAGGCAAATGCTTAGTTACCACACCTCCACTCATAAGCCAATAAAGGACATCAGCTGCCAGATTTGTGGCAAAAAGTTCTACTCAAGGGGCAGATTACGCGCGCACATGATAATACACAATAAAGACAAAGTAGTCATATGCAAATTATGCTCCGCCTATTTGTCTAACGCGGAGTCGCTGGAAACGCATCACAGGAACTTTCACATGCAGGATTACGTGTGTAACGTCTGTGGCAAGCATGTAAAATCGAGGAAGGCCTTGCATAATCATCAAAATGTTCATGCCGCTGCGAGGTACAAGTGCTCCCTCTGCCCGAATGTGTACAAGAGTAGTCAAATTTTGAAAGAACATCTGTTAAAGCACAAAGGCATCAGAAAATACAAATGCAACGTCTGCGAGAAATCGTTCGGCCAGCAGTCTCATTTAGCTGCTCACATGGCCGTGCATAGCGAGATTAGGTTTCATTGTCCGGCGTGCGACAAAGCTTTCAACCGACACGATAACATGAAGATACACACTAAACGGTGTAAACCGTTCCTCGCCAATCCAGATTTAAAGGATCTATGGAGGAAGAAGATGACGAGCGCGCCTTTCAATAAGGCGGCGGAATTGATCGAAGATTTTAAGACCGGCGATTCGTCGAATTCTGCGTCCCACATTGATGATCCGGACGAGGAATCGTCGACGAATAACGTAGACGATAAAGAAAAGACTGGGATGAACCTCTGTCAATTAGGGCTGAATATATCTTGCATTAAGTCGACGGACCAAACGTGGAGTCACGATGACGTGTATGCAGATGCGGATGGGATAACGAGGTCCGCCGAGATCAGTGTGATTCAGATCCTTCCGGAAAACGAGAATGTAACAGTCCTCGAGAATGTTCTGGGACCAGAGAGCTTTTGA
Protein Sequence
MLENFEIGVEISVSYFEAKIEENDGLPQNVCMRCLGTLEFLCDFYEQCHLTQKEFKQARKNESEQFQRDSDAESDKENTFPSTNDVKRKAKPLSPVHSKSTKNGLTLASYCKVESKDGISSPRRLDNTDCSNEVQSAADRTVQVNSSLVPKKQSALDHIVVHGNHSKNEQRGSSSLKCRRSLMPEKVDAPKATVIRTARSESMSDSINSIFKSISDGDMKSELPARRKRGRKSKLEKMKEAGLPLVIKRKVQSNLDDNKTNDNQYKRHCLRAIFTNNKSKTPNSAVISSKAEVEKVVVVDTMLSDSHGKSNKDKKNNIVCNNGPIFDSSMEAKAKEEDSPKKKEENSVTCKAISVIVKQEKVETEGAPHQRTGKSNQIVWIPNEMLTQEPECLSRKVQQHTESSPVVPSLSNETKRTESSQSNSIVQSDVSEDSDVSASTDREDLGPKMFAKQNRVTVIKSSQTKEISIGETIEKDSRKSNDAAEMDDSARDDLNHDAAELPSSRRPRRNSSLVESKSRDRSFGKVSELISDEQKQVIETYYTVDMSIVNSKEVQENLTIIDKKNIRCNICGTLYLRMDKCQVHIWGHLQMKPYQCKACDFATVTVSNVRCHIRKSHLKIKPFACHLCEKRYVTSALLDEHINTHTGERPFKCKLCDFASASRQMLSYHTSTHKPIKDISCQICGKKFYSRGRLRAHMIIHNKDKVVICKLCSAYLSNAESLETHHRNFHMQDYVCNVCGKHVKSRKALHNHQNVHAAARYKCSLCPNVYKSSQILKEHLLKHKGIRKYKCNVCEKSFGQQSHLAAHMAVHSEIRFHCPACDKAFNRHDNMKIHTKRCKPFLANPDLKDLWRKKMTSAPFNKAAELIEDFKTGDSSNSASHIDDPDEESSTNNVDDKEKTGMNLCQLGLNISCIKSTDQTWSHDDVYADADGITRSAEISVIQILPENENVTVLENVLGPESF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00088321;
90% Identity
-
80% Identity
-