Amar007848.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Andrena marginata
Gene Symbol
-
Assembly
GCA_963932335.1
Location
OZ010661.1:5485236-5488220[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 3.4 2.8e+02 2.6 0.8 3 20 329 346 327 348 0.91
2 16 2.6 2.2e+02 2.9 0.9 2 20 385 403 384 405 0.90
3 16 0.029 2.4 9.1 5.0 2 23 447 469 446 469 0.96
4 16 0.076 6.3 7.8 0.2 1 23 475 497 475 497 0.90
5 16 4e-06 0.00033 21.2 3.4 1 23 503 525 503 525 0.96
6 16 0.00073 0.06 14.1 3.7 1 23 534 556 534 556 0.97
7 16 1.1e-05 0.0009 19.8 2.6 1 23 562 584 562 584 0.98
8 16 0.00013 0.011 16.4 0.5 1 23 589 611 589 611 0.97
9 16 0.11 9.4 7.2 8.1 1 23 618 640 618 640 0.99
10 16 0.14 12 6.9 0.5 2 21 660 679 659 680 0.92
11 16 0.00038 0.031 15.0 0.6 2 23 689 711 688 711 0.96
12 16 0.00051 0.042 14.6 0.6 1 23 717 739 717 739 0.96
13 16 0.00072 0.059 14.1 2.9 1 23 745 767 745 767 0.98
14 16 1.2e-06 0.0001 22.8 2.7 1 23 773 795 773 795 0.98
15 16 1.3e-06 0.00011 22.7 1.5 1 23 801 823 801 823 0.98
16 16 0.00013 0.011 16.4 0.5 2 23 829 850 828 850 0.96

Sequence Information

Coding Sequence
ATGAGAGTGATCTGTGCCGTGAAAAATTGTAAATACTCGTCGGAAAATGAAAACTCGGCGGATATCATTTTCATTCACTTTCCAAACGACGATACATCTAAAATATGGGCGCATCACTGTGGCAGGACGGACCTTCTAATGAAATCGAACGAAGAGCTGCACTTGAATTATTACATATGTTCTCATCATATAGAAGACCGCTATTATATAAGTAAAATAGACCCTGTCATAATAGACCAGCATGCTGTCCCTACATTATTCGAGTCGGATGTTACGACAGAAAAGAATTCGGAGGATATGTTCAGCAGAAGTGAACAAGCAGAAGTTGTATTATCGTATTGCGATATGGATGCAGAGATAGATCAGTATCGCGACATCGGCATCAGGTTCCCGAATTTGTGCAGAATATGCGGAGAACCGACTCTAGATGGTATAGAAATATTCGCAGGCAAGGGGATGGAATTGAAGCTGAGAGAAAAAATAAGTTTACATCTACCGATAACCATTGATATGGAGGATTTAATGCCGCAGAAATTATGTATGGACTGTTATAATAAATTAGAAATTGCACATTCGCTTGTTGTAACTTCTCTGCGAACAGATATAAGGCTAAAGAGATTTCTAAATATTAATGACGAACTAAACTATGACAATAAGTACAGTGCTTTAATGAAAGCATGTTCTCCAGAAGTAGCTGACGAAATATGTACAAACGAAGCGACTCAAAGCGCATCTGTGGAAATATCTTCTAACAAAATCGAAGGGATCATGATAAATGAAAATAGCGTTACGAAATTGAATTGCTTGGAAGATATCGGCGCGCAAAAAAGTACCTTTGCAAACAACATGAGGAAGAAAATACAATCCGAATTGAGCTGTCTTATTGAATCCTACAACGAAGAGAACAAGGAAGACGAGTCTGTGAATGGTGCGACAACGAATGAGCCGAACAACGACACAAAAGATAACGATAATGAAATCGCATGTTTTCATTGCAAAGATTTATTTAAGACGCGGGAGATGTTTGAAAATCACAAGATGTTGTGCGACGAAGAGGAGGTAATaatagagaaagagaaagaaattgaTAGTAATATAAACAGCAAAGAGTCTAGCGATGTAAAAATAATGACTGTTCAGTTCGTCGCGAAGACATGCGATGCTTGCCACGAACGCTTCGAAGATGATAAACAATTTTCTGAGCATAAACTGTCGTACTCTAAATTCTCCCAAGAACAATACCAAGCTCCTAATAAACCGAGTACATCGGAGAAAGAGTGCAGTATCCAGAAAGATGATGTTGGTAACGACGCATTCGCATTAGCGGAAGCTAATAAAAAGTGTGGCCATTGCGAAGCAATTTATTCCACGAAGAAGGAATTATTACACCACATAGCGAAGTGTCACGGAGGTCAATTGTTGTTTAAATGTATCGCGTGCAATAGAACCTACGAGAAATGGTCTAGCTTGGACGTACACGAGGCTACTCACAGAATAGATAAGCCGTATCTATGCGATCTGTGTGGAAAGAGCTTTAAACACTCTAACAACTTAAGGGGCCACAAGAGAACTCATTTGGACGACTCGAGGAAGAAACGGCACGTCTGTGAAATCTGTGGGAATGCATTCAGATCTAGATTTCATTTGGGGGAGCATATGAACCACCACAATGGAAATAAGCCTTACTCGTGCGAGAAGTGCGGGAAAACATTTTACAAGCGGATACAGTTGAGGCAGCACAGGCTATCTCATGGTTCGAATAAGCACATCTGCCCGATATGTGCAGCAGCTTTCAATCGTAAAGGGAATATGAATACGCATCTGAAACGGCATAATAACGGTGATGGGACATACACGTGTAGCGTTTGCTTCTGTAGATGTAAATCAATGAGCGATCTTAAGTTACACAGGAAGAAGCACACAGAGGAGGATATCGTGGAGAGCATAAAAAGAAAGTGCATCGGCAAGGCTATATGGCAGTGTAAATGCTGCAGTCGGATGTTCCCGACGCGGGTAGCTTTACTGAATCACGAGCGCGTACGTGAAGGTGAAAGAACGAGCGTCGAATGCAACGTTTGCGGGAAACAGCTGGCAAGCAAAAAGTCCCTGACATATCACAAGAGATCTATGCATTCTACGGAACGGTCGCACATGTGTCAATATTGCGGGGAATCGTTTGTTTCCAAAGAGGCGCGTCTTATACACGAGAGGATACACACCGGGGAGCGGCCGTACGCCTGCAAAATATGTAAAATGGAATACAAGTGTTCCAGCAACTTAAATCAGCACATGAAAATCCATTCCGGCATCAAGCCCCATAAGTGTACGTACTGTAGCAAAAGTTTCACCCGGAAGGGGGCGTTAAATGTGCACGAGAGGATTCACACAGGGGAGAAACCATTCCCCTGCGAGACGTGCGGCAGGACATTCTCGCAGAAAAACGACATGCTGAAGCACACCAGGACCCACGACCGGAAATCGTTGCGCTGCGAGCAGTGCGACGAGACTTTTACGCGGAAAAAGGATATCTTGAAGCACGTTGCTATGCACGAGCAGGATAACTCTGTGGTACAGGAATATGTAGAGATGCAACCTTACGATGTAAATATCACGTGCTCTCAATTCGAATAG
Protein Sequence
MRVICAVKNCKYSSENENSADIIFIHFPNDDTSKIWAHHCGRTDLLMKSNEELHLNYYICSHHIEDRYYISKIDPVIIDQHAVPTLFESDVTTEKNSEDMFSRSEQAEVVLSYCDMDAEIDQYRDIGIRFPNLCRICGEPTLDGIEIFAGKGMELKLREKISLHLPITIDMEDLMPQKLCMDCYNKLEIAHSLVVTSLRTDIRLKRFLNINDELNYDNKYSALMKACSPEVADEICTNEATQSASVEISSNKIEGIMINENSVTKLNCLEDIGAQKSTFANNMRKKIQSELSCLIESYNEENKEDESVNGATTNEPNNDTKDNDNEIACFHCKDLFKTREMFENHKMLCDEEEVIIEKEKEIDSNINSKESSDVKIMTVQFVAKTCDACHERFEDDKQFSEHKLSYSKFSQEQYQAPNKPSTSEKECSIQKDDVGNDAFALAEANKKCGHCEAIYSTKKELLHHIAKCHGGQLLFKCIACNRTYEKWSSLDVHEATHRIDKPYLCDLCGKSFKHSNNLRGHKRTHLDDSRKKRHVCEICGNAFRSRFHLGEHMNHHNGNKPYSCEKCGKTFYKRIQLRQHRLSHGSNKHICPICAAAFNRKGNMNTHLKRHNNGDGTYTCSVCFCRCKSMSDLKLHRKKHTEEDIVESIKRKCIGKAIWQCKCCSRMFPTRVALLNHERVREGERTSVECNVCGKQLASKKSLTYHKRSMHSTERSHMCQYCGESFVSKEARLIHERIHTGERPYACKICKMEYKCSSNLNQHMKIHSGIKPHKCTYCSKSFTRKGALNVHERIHTGEKPFPCETCGRTFSQKNDMLKHTRTHDRKSLRCEQCDETFTRKKDILKHVAMHEQDNSVVQEYVEMQPYDVNITCSQFE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00085626;
90% Identity
iTF_00084606;
80% Identity
iTF_00087234;