Amar004645.1
Basic Information
- Insect
- Andrena marginata
- Gene Symbol
- -
- Assembly
- GCA_963932335.1
- Location
- OZ010660.1:13103162-13104680[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.9e-08 3.3e-05 23.8 0.0 2 41 14 53 13 56 0.93 2 2 9.8 3.6e+03 -2.0 0.0 21 29 356 364 356 365 0.83
Sequence Information
- Coding Sequence
- ATGGTACGCACGTACCGTCGCAAACGTGAGGCAGTTGATAAAGAAAGACTTCAAAAAGCCGTCATATCCGTCAGGGGTGATGCCATGCCAGTTGCGACTGCGGCGAAGCAATTCCAAATTCCAAGGACCACGTTACGGGATTGCCTCAGAAAAAATAATGATGAATTAGCAGAGTTAGAAAAAGTCGCCGTTCCAACACATGGGCATAATACCCTTTACTCCGCCCAGGCAGAGGAAGTTCTACGAGAGTATTTACTGCATTGCAACGATATGTACTTCGGACTTTCTGCAAGAGAAGTACGTGGGTTGGTTTTTGATTTTGCGATAAAATTGGAGTTGAAAAGTCCAGCGTCATGGGAGGTTTCTCGCATGGCTGGAAAAGACTGGCTGTGGGGTTTCCTGAAACGTCATCAGGCTCTAGGCATACGAAAACCAGAGGCGACGAGTCTAGCGCGCGCAACCAGTTTTAATCGTACAACTGTTGCGATCTTTTTCGCACTGCTCAAATCCGTTCTGGATCGTTGGCATTTCCAAGCGCATTGTATATGGAACATGGATGAGACGGGAATTACGACGGTCCAAACTCCCGACAGAGTTATTGCACGACGCGGCATCAAACAAGTCGGGCGCGTGACGTCTGGTGAACGAGGACATCTTGTCACTTTGGCAATGGCCGTTGCGGCAAGCGGACGTTCGTTGCCTCCGTTCTTTATTTTCCCTaggaaaaaattcaaagatcACTTCCTGAATGGCAGATCTTTGGGCTGCCAGGGAGACGCAAACCCCAGCGGATGGATGAACACTGAGCACATCGTCAAATTTTTGCACTTTTTTCAATTACACGTGTGTGCTTCGGTCGACAATCCGGTCTTGCTTATCCTCGATAATCATGAATCGCACCTGTCCATCGAGGGCTTGGATTTTTGTACAGCGAATGGGATTGTTGTACTTTCGCTTCCTCCACACTGCTCCCACAAGCTGCAACCACTGGATCGCACAGTGTATGGGCCTTTAAAAAAAACCGTGAACTCGCAATGCGATAACTGGATGACTACGAATCCAGGGAGAGCTATGACAATTTACGATATTCCCGGAATCGTTAAAATTGcgcttcttcgcgccgtgaCTCATCAGAATATCGTGTCCGGATTCGAGTGCACGGGGATTTTTCCTTTCAATCCGGATGTTTTCCAAGAATATGAATGTTTACCAAACAGCGTTACGGACCGAGAGAACCCTTCAACTTCTGCGAACGATGGGAATTCTGGGTCCGAACCATTGTCAGCCGCATCTGTAGAAACAGTCGAGCCGGAGACAAATATAAACGAACCAACGACTTCAACCGTGTCAGGTTCCCAAGATGAGTTGCGATCAACGCTTCAAACCATACGTCCATTACCTAAGGCTGCACCGAGGCAGCAAAGTCGTTGA
- Protein Sequence
- MVRTYRRKREAVDKERLQKAVISVRGDAMPVATAAKQFQIPRTTLRDCLRKNNDELAELEKVAVPTHGHNTLYSAQAEEVLREYLLHCNDMYFGLSAREVRGLVFDFAIKLELKSPASWEVSRMAGKDWLWGFLKRHQALGIRKPEATSLARATSFNRTTVAIFFALLKSVLDRWHFQAHCIWNMDETGITTVQTPDRVIARRGIKQVGRVTSGERGHLVTLAMAVAASGRSLPPFFIFPRKKFKDHFLNGRSLGCQGDANPSGWMNTEHIVKFLHFFQLHVCASVDNPVLLILDNHESHLSIEGLDFCTANGIVVLSLPPHCSHKLQPLDRTVYGPLKKTVNSQCDNWMTTNPGRAMTIYDIPGIVKIALLRAVTHQNIVSGFECTGIFPFNPDVFQEYECLPNSVTDRENPSTSANDGNSGSEPLSAASVETVEPETNINEPTTSTVSGSQDELRSTLQTIRPLPKAAPRQQSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00085281;
- 90% Identity
- iTF_00085281;
- 80% Identity
- -