Amar008518.1
Basic Information
- Insect
- Andrena marginata
- Gene Symbol
- -
- Assembly
- GCA_963932335.1
- Location
- OZ010661.1:16635882-16637418[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-11 4e-09 36.3 0.0 2 37 24 59 23 65 0.93
Sequence Information
- Coding Sequence
- ATGGCAGCACAGAGTCCAAAAACAGAAAACAATATAAGAaaccaaaaaaataaatatttaacctATTCTAAAGACGCTCTCACCGAAGCACTAAATGCTGTTGCGAAGGGAATGTCGATTCGATCAGCTAGTCAAAAGTTTAAAGTGCCTTTTTCTACAATTCGATGCAAACATAAAGGTATTTATGATGTCGAGAAAAGAAGCGGTCCTGCCACTATATTGACACGTGAAGAAGAACAGCAACTGGTGGATTACATCCTTCTGATGGGTAACAAAGGTTTCCCTTTTACAAAGCACATGTTGCTTGATAGTGTTGCTCTGTTGATGAagaaattaaagaagaaaactCCATTCAATGGAGGCAGACCAGGCAGACACTGGTTTGAGGGTTTTCTAAAGCGTTACCCACAATTAAAGGTGAGAACAccacaaaatttaaataaaagacgAGGTGATGTCACCGAGGAACAACTTCGTGGATGGTTTGAAGAAGTAGGGAGTTACCTAAAATCAAAGAATTTACTCGACATTGATTCTTCTCGAATATTCAATTGTGACGAGTCTGCCTTTTTCCTTTGCCCAAAAGGAAATAAAGTATTGGCAAATAAGAAATCAAAAGCTGTGTACAATTTAGGTGGTGGAAATGATAAAGAATGTTTGACAGCTTTAATAACAGgcAATGCAGCTGGTCAAATGGCACCACCCATGATAATGTATCCATATAAGAGGTTGTCTGCAGTAATTACTGAAAAGGCACCGAAAAATTGGAGTGTAGGAATGTCAGACAATGGTTGGATGACAGGCGAAGCCTTTTATGAATATATGGCTAATGTATTTTATCCATGGTGTAGAAAAATGGAAATTGAGTTCCCCATAATTATGTACATGGATGGGCATTCGTCTCGCACAACATTGGCATTGAGTGATTTCTGCATTGCTAAGCAGATTGAGTTGGTGTCATTGTACCCAAATGCAATGCACATCATGCAACCAATGGATGTAGCCatatttcgttcattaaaaagTGAATGGAAGAAAGCAGTGACAAATTGGAGAATTGAAAATGGTGGATCAGCTCTACAGAAATCTGATTTTGCTCCAGTATTAAAAATTGCTATCGATTCAATGAACCCAGAACAAAGTTTGCGTAATGGTTTTCATTGCTGTGGTCTTTCACCATTTTCACCTAATGCCATAAATTATAGACAATTGCTAAACAATCATGAAGCAGTACAGCCTCGAAAAACTGCAAATCAAGGCCCGAAGTCAACATTAGAATTGATGGAAAGTAGTATCGATAAAAACACCcttcaactttttaaaatagCCAGAAACCGAGATGGGAAGTGGTATGGTGCAGAGAAGTTTGCGGAGTTATTTGTTGTTTGGCTTAAGTGTGAAAACATGGCAAAATCAAACTGCGCGATGAGTGATCACCAAGGCTCTTcggtaatattaattaaataa
- Protein Sequence
- MAAQSPKTENNIRNQKNKYLTYSKDALTEALNAVAKGMSIRSASQKFKVPFSTIRCKHKGIYDVEKRSGPATILTREEEQQLVDYILLMGNKGFPFTKHMLLDSVALLMKKLKKKTPFNGGRPGRHWFEGFLKRYPQLKVRTPQNLNKRRGDVTEEQLRGWFEEVGSYLKSKNLLDIDSSRIFNCDESAFFLCPKGNKVLANKKSKAVYNLGGGNDKECLTALITGNAAGQMAPPMIMYPYKRLSAVITEKAPKNWSVGMSDNGWMTGEAFYEYMANVFYPWCRKMEIEFPIIMYMDGHSSRTTLALSDFCIAKQIELVSLYPNAMHIMQPMDVAIFRSLKSEWKKAVTNWRIENGGSALQKSDFAPVLKIAIDSMNPEQSLRNGFHCCGLSPFSPNAINYRQLLNNHEAVQPRKTANQGPKSTLELMESSIDKNTLQLFKIARNRDGKWYGAEKFAELFVVWLKCENMAKSNCAMSDHQGSSVILIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00085236;
- 90% Identity
- iTF_00085236;
- 80% Identity
- -