Afla019995.1
Basic Information
- Insect
- Andrena flavipes
- Gene Symbol
- -
- Assembly
- GCA_963971345.1
- Location
- OZ020481.1:48955646-48958260[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00059 0.074 14.3 7.2 1 23 242 264 242 264 0.98 2 12 4.2e-05 0.0053 17.9 1.7 1 23 269 291 269 291 0.97 3 12 0.0004 0.05 14.8 1.5 3 23 302 322 301 322 0.98 4 12 1.1 1.4e+02 4.0 6.2 1 23 403 425 403 425 0.95 5 12 0.0025 0.31 12.3 1.6 1 22 430 451 430 454 0.90 6 12 0.00021 0.026 15.7 0.3 1 23 495 518 495 518 0.92 7 12 1.2e-06 0.00015 22.8 1.5 1 23 555 577 555 577 0.98 8 12 0.00017 0.022 16.0 4.0 1 23 591 613 591 613 0.96 9 12 0.00016 0.02 16.1 4.7 1 23 619 641 619 641 0.98 10 12 0.0026 0.33 12.3 3.3 1 23 647 669 647 669 0.98 11 12 4.9e-05 0.0062 17.7 6.5 1 23 675 697 675 697 0.98 12 12 0.00024 0.03 15.5 0.3 1 21 703 723 703 724 0.93
Sequence Information
- Coding Sequence
- ATGGAGGTAGAAAATAGAGCGAGAATTCTACTCGATCCTAGCGATCTGTGCCGTATTTGCCTTACAACGAATCAAAGTAACCACTGCGTTTTCGGTACTGAGCAAAATGATTTGTCCGAGAAACTCCGTTTGTGCAGCGGCGTGGAGATCACGGAGAACGACGGTTTGCCAGCCAATATCTGTGCGAAATGTATGATAAGAGTCGACAACGCTCATGAATTAAGAAAGCAATGCGAGCGATCGGATATCTGGCTAAGGGAGCTGTACGGGAAACTGAGAGCAGAGTGCAATACTAATCAGTTTAAGACCACCAAAGACCAATGTTGCCAGACAGACTATACCTTTACCtccgattttataaaaatggaaACGAACGTAGCTTCTCCGGCGGATCGTAGCGTCTTGCCGATCGTAGATTGCGATGCTAGTGTCGGGTTTATAGGAGAGGAGTGTAGAACAATTACCGAATCTAACCACGTAGAATACAACGAACCTAATAATCACCCGAGTAATGCCAATATTAAATGTAAGCAAATGGGATGTGAGAAAAGGGAGGCTTATCGAACAAGGAGAACAACTATGTTCAAGAGGGTGACGTCTATGGAGAATCTGAGAAATCATAAAGAGAGACAAAGGCAGTACATAAAGAAGAACGCAAATGTTAAGAGGGACATGGAAAACGAGCATTCTGGGAATACTAATGACACAGGGTCTGGTAATTCTTACAGCTGTCCGAAATGTAATAGATGTTACTCTAGTAAAAAGTATCTGGACAAGCACGTGTGTTCTCACAACGAGGAGAGATACACTTGTGATAAGTGTGACGAGCAGTTTTCCCAGCTCGACAAATTGACGAAGCATAGCAAATTGCACAAAGTTAAAGAGAAACTTGAACCGGTATTATGTAGAATATGTAACAAGACTTTTAAGAAAACCGACACTATGGTACGACATTTAAACGTTCATAAAAGAGCGAATCCGAAAGAGGTTCTCTCCATTTTGAAAGAGATTAGGGACaagaggaaattaaaaaatatcaacGAACCTGAAGGTGGAACAGTTGTGACGACAAATGGAGGACGCGCGAGTAATGAAAATGGTACATTAAAGTCTGAACATGAAAGCTGTAATCCGCGTTTATTAAATTCGGATACTGTTACGAGTAAAAAGTCCGAGTCTCCGGATGGTGGATCGCCGCGGGTGGTGCATCGATGCAGGTACTGCGACAAATGCTATCTGCACGATAAATTGCTCGAGGAGCATTTGTTGCTGCACATCGAGAAGGGATTCGTTTGTACCGTGTGCAATATGAAATTCTTCCGTCAAGACAGATTAGAGAGCCACAAAAATCGGTATGGTCACAATGAGGCAGCAGCAGAGGCTTCTTTAGAACCACAGAAGCCATCCGACGAAAAGTCGGCGATTAAGTTGATAAATAGCTGGATAAGGGAGGAGCTCGACTCGGATAACGAGGAGAAGGGTTTCCCTTGTATAATTTGTGGGAAATCGTACGATACTAAAAGATCTCTACTGAAGCATCAGCTGAACGCGCACAGCTCGCAAAAGGAGGAGGGTTGCACGAGCTGTGGCGACGGGTGTATTCGCGAGGAAAATGTCAAAGAAAAGATCCAGCAGAAAGCGAATGAGATGTTGAAATCATCCTATCGATGCAACGACTGTAATAAATCTTTCGAAACGGAGACGAAACTGCAAAGGCACGCAAAGATTCATGAACGCGCCAAAGAACAGGAGGATGCGAATTTCAAGCGATTCTTGTGCCATATATGTAGCAAAACGTTTCGGCAGAATACAGGCCTCATGTTCCACATGCGAACGCATACTGGTTATAAGCCTCACGTTTGCAAGTACTGCGGAAGAGGATTCACATCGAATTCGAACTGCATCAATCACGAGAGGACGCACACAGGCGACAGACCGTTCATTTGTCACTTTTGCAGCGCAGCCTTCGCCAAATCGTGCACCCTTAAAGCGCACATTACAACGCACACCGGGGAGGCCAACTACCATTGCAAAACTTGCGGGAAATCGTTCAGGAGACTCAAGTACTTGAAGGAGCACAGATTCACGCATACCGGTGAGAAACCGTACGCTTGCAAGATTTGTGGCACGGCGTACAGCCACAACGGCAGTTTATTCGTGCACGAGAAGAAATGTAAAGCTCAGTATCGAAATGCGCAGAACCATTGTCAGTCTGAAACAACGTCTTCGCCGAGCGTGACTCCCATTATCACAATTCTACCGCAGGCCTATCTGAACGAAGTCATCCTTCCGTTGACCTCGCAGGAGAGCAAAGTCTATGTTAACGACATCCAGAGAATGAATTCTCCTGGTATCGATAGTGTAAGTCCTGTCGCCACGCCGGATTTACATGTCCATCCGACTTCGGACACCTCTGATGTTTCTCTAGCTGTTAAAAACTTTGCTCTCATCGGACATATGTTTCAATCGTAG
- Protein Sequence
- MEVENRARILLDPSDLCRICLTTNQSNHCVFGTEQNDLSEKLRLCSGVEITENDGLPANICAKCMIRVDNAHELRKQCERSDIWLRELYGKLRAECNTNQFKTTKDQCCQTDYTFTSDFIKMETNVASPADRSVLPIVDCDASVGFIGEECRTITESNHVEYNEPNNHPSNANIKCKQMGCEKREAYRTRRTTMFKRVTSMENLRNHKERQRQYIKKNANVKRDMENEHSGNTNDTGSGNSYSCPKCNRCYSSKKYLDKHVCSHNEERYTCDKCDEQFSQLDKLTKHSKLHKVKEKLEPVLCRICNKTFKKTDTMVRHLNVHKRANPKEVLSILKEIRDKRKLKNINEPEGGTVVTTNGGRASNENGTLKSEHESCNPRLLNSDTVTSKKSESPDGGSPRVVHRCRYCDKCYLHDKLLEEHLLLHIEKGFVCTVCNMKFFRQDRLESHKNRYGHNEAAAEASLEPQKPSDEKSAIKLINSWIREELDSDNEEKGFPCIICGKSYDTKRSLLKHQLNAHSSQKEEGCTSCGDGCIREENVKEKIQQKANEMLKSSYRCNDCNKSFETETKLQRHAKIHERAKEQEDANFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFICHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHNGSLFVHEKKCKAQYRNAQNHCQSETTSSPSVTPIITILPQAYLNEVILPLTSQESKVYVNDIQRMNSPGIDSVSPVATPDLHVHPTSDTSDVSLAVKNFALIGHMFQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00084756;
- 90% Identity
- -
- 80% Identity
- -