Afla014216.1
Basic Information
- Insect
- Andrena flavipes
- Gene Symbol
- -
- Assembly
- GCA_963971345.1
- Location
- OZ020480.1:76418856-76422541[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.088 11 7.5 0.3 6 21 258 273 255 274 0.90 2 13 0.04 5 8.5 0.9 1 23 280 303 280 303 0.96 3 13 8.4e-05 0.011 17.0 0.3 3 23 317 338 316 338 0.96 4 13 0.025 3.2 9.2 0.5 3 23 351 371 351 371 0.98 5 13 9.9e-08 1.2e-05 26.2 1.5 2 23 419 440 418 440 0.97 6 13 0.0049 0.61 11.4 0.5 1 23 445 468 445 468 0.93 7 13 1 1.3e+02 4.1 1.6 2 23 542 563 542 563 0.96 8 13 1.4e-05 0.0018 19.4 4.4 1 23 572 594 572 594 0.98 9 13 4.2e-07 5.3e-05 24.2 0.9 1 23 603 625 603 625 0.98 10 13 0.044 5.6 8.4 3.4 1 22 631 652 631 652 0.95 11 13 0.00021 0.026 15.7 2.1 1 23 679 701 679 701 0.99 12 13 0.18 23 6.5 0.0 1 23 764 787 764 787 0.97 13 13 7e-07 8.8e-05 23.5 5.9 1 23 792 815 792 815 0.98
Sequence Information
- Coding Sequence
- ATGGCTGTGCCAAGCAAGTGGGAGAACGCTTGTAGACTCTGCTCCGAGGAGAGGAACGAGATGTTGCCGATATTTGGTAACGAGGGGGTGCAGCGTAAGGTGGCGCAGAAACTACGAGCCTGCTTGCCCGTGCTCGTGTACAAAGCCGATCCACTGCCGAAGCAAATCTGCCAGTTCTGCGCCGCCAGGCTCGACGACGTCTACGAGTTCAGGGAATACTGCCTGGGCGTCTACAAGAGCATGCACCTCAAGCTGCTCAAGTACAAGGACCTAGAGTCCGTTCAGATTTACCTGGAGGCCATGAAGAACTCTCCGGACCCGTGCCAGGCGCAACTGTGGAGGGAAAAGGCCAGAGCACCGCCACCTTTAGTACCTTTGCCGGCTTTACTGCCGGCCGAAAGTCCGTCGACGCCGGTCGATATTAGCAACGAGCACCCCAACGTTTGTATCGAATCTTTGTCCGAGTTACCTTGCGAAGTGGAGATCAAGGAAATGAACGCCGAACCAATATTGGGCACGGACGCCACCGTGTACGAATCGTCGGGTACGAACGACGTAGGGAATAAGCGGTATAAGGCGGACAAAGTAGCGGAAGATGCTAAGAATTCGGCGAAGGAGGAGAGCTCCGATTCGCTGGAAGAACTTCGGGTGAAACGGGAAGAGAAACGGACGAGTATTTTGGAACAGGTGCTGACGGGCAACTTGACGATGAACGATAGAAAGGATTTGAACCCGAAGGCGAAGCTGTCCTCTAAATGGTGGTGCGCGCCTTGTAATAGTTACTTCAAAACTAAGGAGAGCTTGATGAAGCACATGCAGTTGGATTGTCCGAGGAAGTACACGTGTAGGAAGTGCTCTGTTTGCTTCGAATTGGTCGAGGATTTGGCTAAGCACGAAGCGACTAATCACTTGAAAGTGAATCTAGATTTTGATAAGAGCGTTAAAGACTGCGACGAGTGCGACAGGCAGTTCGTGAGCTGGGAGATGCTGAAGCAGCACAGGTTGCGCGATCATCTGGCCGAGGCGATCGAAATCGGGACCAATACGTGGTGCTCTCTGTGCAATAGATTTTTCCCAAGCATAGAAGCTTATCAGAATCATACTCAGTTACACGAAGTCAATAATCATGCGCCGTTGAAAGCGCCACCGTTGACGGAGGAGCAGTCGGTGACGATTTTTAAGACCGAGGAAACTCCGAAGGAAACTCCGAGGGAAACTAAGAGGGAACACTTTGTGGAAGCTGCTAAATCACTTACGTGCCCCACTTGCGGAAAGGTCTGCACTCAGCAAAGCGCGCTGTCGAACCACATGCGAACGCACGAACCCAAGAGACACAAATGTGATATATGCGGCCGATCCTTTGGACTTTTCATACGCTTAGCAGCTCATAGAATGAGCGAGCATAGCCAGCAGCCTACGATGTCGCCTGTAATGGCAAGCGTGGAACAAGAGGAGGCTCTGAACGCCGAGAGAGAAGCCAGGGAAGCGAGGGAAGCTAGAACCCGCGCAGTAAGAAGCAGACCGTATTCCGAGATCGTCGAGAGGAAAGATATTCCGAATCACGACGAGCCACCTGCGAAGAGGAGCACCCCGTTGAATACCAATGCATTTAAAAACGTGGCCAGATGCGGGATATGTTTGCAGTGGTTCAGCGACCACACGACAATGTTGACGCATTTACAAACGCATTCGGATAACTACACCTGCAAGAACTTCACCTGTCACATATGTAAAAAATCCTTCAAAGAGAAGTGGCAATTGTTTAGACACGAGATGTCCCACAAACGCAACGAGTCCGTGCCGATGTACGTGTGCACTGTGTGCAACAAATCGTTCGTGGACAAGAGCGCGTACAAAGTGCACCAGAAGTCGCACGTGGTCGACAAAACATATCACTGCGCCAAGTGTAATAAGATATTTTTCAAAGAGGTCTCGCTGTTAACGCACCAGTGCACGACGATACCTATGTTCAGTAAAAAGGCGGCGCCCTCCAAACCCCTGCAGAAGACTCCGGCACTGGGCAACAGCAAGAGGTACAAGTGCTCCATGTGCAACGCGTCGTTCAGTAGCTTTCAATCAAAGAATTCCCACATGAGAGTGCACACGGAAGGTTCGCACACAGCGGTGCAGAAGCAAGAAGCACAAGCAGAGTCGGAGGACGAACCTATGCCAAAATTGAGCCCCGAAACCTCGCTGGAATACGCGATGCTCATCGAACCGAAAGTAGAAATTAACGAGGACAGCGCTCCACCGCCCGTTAAGAGGACACTTATCAGGACAACTGGAGGGTACCGATGCGGGGTATGCCAGTCTCCATTCGTCTTACGGGAATTAGCCGTAGCGCACTTGAGATCAGCGCACCCCCTGATGCCCTACCAATGCCCCTACTGTAAAAAGCGATTCACGACACAGTACACGTTTACCCATCATATTAAAACCGACCACCCCGACGAGCACGAGAATTGA
- Protein Sequence
- MAVPSKWENACRLCSEERNEMLPIFGNEGVQRKVAQKLRACLPVLVYKADPLPKQICQFCAARLDDVYEFREYCLGVYKSMHLKLLKYKDLESVQIYLEAMKNSPDPCQAQLWREKARAPPPLVPLPALLPAESPSTPVDISNEHPNVCIESLSELPCEVEIKEMNAEPILGTDATVYESSGTNDVGNKRYKADKVAEDAKNSAKEESSDSLEELRVKREEKRTSILEQVLTGNLTMNDRKDLNPKAKLSSKWWCAPCNSYFKTKESLMKHMQLDCPRKYTCRKCSVCFELVEDLAKHEATNHLKVNLDFDKSVKDCDECDRQFVSWEMLKQHRLRDHLAEAIEIGTNTWCSLCNRFFPSIEAYQNHTQLHEVNNHAPLKAPPLTEEQSVTIFKTEETPKETPRETKREHFVEAAKSLTCPTCGKVCTQQSALSNHMRTHEPKRHKCDICGRSFGLFIRLAAHRMSEHSQQPTMSPVMASVEQEEALNAEREAREAREARTRAVRSRPYSEIVERKDIPNHDEPPAKRSTPLNTNAFKNVARCGICLQWFSDHTTMLTHLQTHSDNYTCKNFTCHICKKSFKEKWQLFRHEMSHKRNESVPMYVCTVCNKSFVDKSAYKVHQKSHVVDKTYHCAKCNKIFFKEVSLLTHQCTTIPMFSKKAAPSKPLQKTPALGNSKRYKCSMCNASFSSFQSKNSHMRVHTEGSHTAVQKQEAQAESEDEPMPKLSPETSLEYAMLIEPKVEINEDSAPPPVKRTLIRTTGGYRCGVCQSPFVLRELAVAHLRSAHPLMPYQCPYCKKRFTTQYTFTHHIKTDHPDEHEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00762732;
- 90% Identity
- iTF_00088261;
- 80% Identity
- -