Afla027433.2
Basic Information
- Insect
- Andrena flavipes
- Gene Symbol
- -
- Assembly
- GCA_963971345.1
- Location
- OZ020482.1:57831666-57835539[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.56 71 4.9 0.1 1 19 54 72 54 74 0.94 2 20 0.0015 0.18 13.1 1.4 1 22 92 113 92 113 0.96 3 20 9.1e-05 0.011 16.9 2.5 2 23 146 167 145 167 0.94 4 20 0.00032 0.04 15.2 1.6 1 23 171 193 171 193 0.98 5 20 0.0002 0.026 15.8 0.5 3 23 201 221 200 221 0.97 6 20 4.7e-05 0.0059 17.8 4.0 2 23 228 249 227 249 0.96 7 20 0.45 56 5.2 3.7 1 19 258 280 258 282 0.73 8 20 0.042 5.3 8.5 0.3 3 23 288 307 287 307 0.96 9 20 2.5e-06 0.00032 21.8 2.1 3 23 315 335 314 335 0.98 10 20 1.3e-07 1.6e-05 25.8 1.7 1 23 341 363 341 363 0.99 11 20 0.022 2.7 9.4 2.3 1 23 452 474 452 474 0.97 12 20 4.5e-05 0.0056 17.8 0.1 2 23 488 510 488 510 0.96 13 20 0.0011 0.13 13.5 5.9 1 23 516 538 516 538 0.98 14 20 0.039 4.9 8.6 0.4 1 23 542 564 542 564 0.97 15 20 4.9e-06 0.00062 20.9 1.5 3 23 572 592 570 592 0.97 16 20 0.00012 0.016 16.4 0.2 1 23 598 620 598 620 0.98 17 20 0.11 14 7.1 1.3 1 23 626 648 626 648 0.97 18 20 7.6e-07 9.6e-05 23.4 0.1 2 23 655 676 654 676 0.97 19 20 7.5e-07 9.5e-05 23.4 0.6 1 23 682 704 682 704 0.98 20 20 1.3e-07 1.7e-05 25.8 1.9 1 23 710 732 710 732 0.99
Sequence Information
- Coding Sequence
- ATGAAAACGGCTTATGCTTTGTTATCTTTTTGCAGACTGAAAAGCGTGAAGACGATACCAGCCAAGCCGAGTAATCGGTCACGCGACATTGAACCATCGAACTTTATTATCCTTGAAAGTCCATCGAGCGACTCCTGCGTCGTTCAGGAGCTGCTGGCGTTTAAATGCGAGTCTTGCGACGACGAATTCGATACCGATGCGAACTTATTGGTGCACAAGACCGAGCAGTCGATCCTTCGGACACGAAAAGCGTTGCACAAGACCGATAAAAAGCACACCTGTGCTGTTTGTCACGAGACATTCGAAGGGAAGATGCAACTGCTCAAGCATCGGCGAACACGCTGCAGAAATCCCATCGTAGTCGAAAAAAAGCAGCAGAAATCGAAAGGTACCGCGAAAATAATGAAAGACAAAGAACGACAGGTGGACCCAGTAGAGTGCGACATATGCCACAAAGTTTTCAAGAAAAAGAAGTACCTGAATGTTCACAAAACGTTGCACGGGGCGCCCCACGTTTGCCACGTTTGCGGTGCCAAGCTGGCATCCGAGTATTACTTGAAGCTCCATATTAGAAGGCACAACAAAGAGTTCACCGAGTTCTGCGAGGTTTGCAACAAGGGCTTTTACCTGAAGGCGACCCTGAGGACGCACATGAGCGTGCACAGCAACGAGAAGCCTTGCATCTGCGACATCTGCCACAAGTCCTTCGGCAATCGAGTGTACCTGAGGAGTCACATGAAGCTTCACAGTCAGCCTGACACAAGAAAGAAGCACAAGTGCGAGATCTGCGGGTTCGAGACTTTCTACAGCTACTGTTATAAGGAGCATCTCTGGACGCACACTGGCGAGAGCCAAGTAGCTTGCGAGGTATGTGGCAAGCTGGTCAGGCGGCGGTACATGAAGACTCACATTAGAATACACACTGGCGAGAAGCCCGAGTTTTGTGAGTTTTGCGGAAGGGCCTTCAGCTCTAAGAAGTACCTAATCAAACATCGAAGAACTCATACAGGCGAGAAGCCTTACAAGTGTAATATCTGTGACAAACGGTTCACCCAACGTGGCACCCTTAGCATTCACTTACGCCGACACGAGGGTGCTAAGTGCCAGGTGATCAACATCGAGCAAACGAAACTCGAACCGATCGAAACCCTCGAGGATATCGAATTGGTCAAGTACCAAACCGACGTGTGCACTGTCGAGGAGTTCGAACAGATCAGCCATCAGGAGATAGTGACCGACACGTTGGAGTATACCGACGACTCGGACATGAAAATGGATCTTGAGCCAGACAGGGCGGGCATCGACAAGCGCGTCGGCAGTAAGTACGAAACGGGCAGGCGGTGCGCAGTGATATACGAGTGTGACATTTGCAATAAGAGGATGCGCAAGAAGCTACAGTTCTTGAAGCACAGGCAAGACCACGAGAGGAACGGCGAGGACATCGGTGAGGCGATCGGCGGCCGTTGCGAGGAGTGCGACATCATCTTCATCGACGAGGACAAGCTGAAGAAGCACATGATAAAGATACACCAGAAGGAGAGACCGTTCCAGTGCGTGTTCTGCGCCAAATGCTTCAAGACCAAGGAGTTCTTGAAAACCCATTTGAAGCAGCACAACAAACGCTTCACCTGCGACATCTGCGGCATATCCAAGGTGTCCGGCTACGACTTGCGTCTGCACAAGAAAAAGCACAACGCGGAGTTCGTCACCCACTGCGAGATCTGCGGGAAAGGTTTCTATACGAATCAGACTCTGGAACGACACTTGCTAACCCACACTGGCGAGAAGCCATTCGTTTGCAGGATCTGCAAAACGCCATACGCGAGTGCCGCGTATCTTAGCACGCACATGAAGTCCCACGGGGAACGGGAGAAGCACAAGTGCACCATGTGCAACTTCGAGAGCTATTGGAAGGGCGCGTTGAAGGTGCACCTCAGGATACACACTGGGGAAAATTTGATCACTTGCGAGGTTTGCGGAAAGTCGGTGTCGAGCAAAGCGTATCTGCAGATTCACATGCGGATTCATTCGGGGGAAAAGCCGCACGTCTGCGAGGTCTGCGGCAAAGCGTTCAGCGTTCGAAAGTACTTGATCGTGCACCTGAGAACGCACACTGGGGAAAGACCGTACGAATGCAAGGTGTGCCAGAAAAGGTTCACCCAGCAGGGATCTCTGAACTCGCACATGAAGTCGCATAACGAAAGGAAATGA
- Protein Sequence
- MKTAYALLSFCRLKSVKTIPAKPSNRSRDIEPSNFIILESPSSDSCVVQELLAFKCESCDDEFDTDANLLVHKTEQSILRTRKALHKTDKKHTCAVCHETFEGKMQLLKHRRTRCRNPIVVEKKQQKSKGTAKIMKDKERQVDPVECDICHKVFKKKKYLNVHKTLHGAPHVCHVCGAKLASEYYLKLHIRRHNKEFTEFCEVCNKGFYLKATLRTHMSVHSNEKPCICDICHKSFGNRVYLRSHMKLHSQPDTRKKHKCEICGFETFYSYCYKEHLWTHTGESQVACEVCGKLVRRRYMKTHIRIHTGEKPEFCEFCGRAFSSKKYLIKHRRTHTGEKPYKCNICDKRFTQRGTLSIHLRRHEGAKCQVINIEQTKLEPIETLEDIELVKYQTDVCTVEEFEQISHQEIVTDTLEYTDDSDMKMDLEPDRAGIDKRVGSKYETGRRCAVIYECDICNKRMRKKLQFLKHRQDHERNGEDIGEAIGGRCEECDIIFIDEDKLKKHMIKIHQKERPFQCVFCAKCFKTKEFLKTHLKQHNKRFTCDICGISKVSGYDLRLHKKKHNAEFVTHCEICGKGFYTNQTLERHLLTHTGEKPFVCRICKTPYASAAYLSTHMKSHGEREKHKCTMCNFESYWKGALKVHLRIHTGENLITCEVCGKSVSSKAYLQIHMRIHSGEKPHVCEVCGKAFSVRKYLIVHLRTHTGERPYECKVCQKRFTQQGSLNSHMKSHNERK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00088232;
- 90% Identity
- iTF_00088232;
- 80% Identity
- -