Afla005667.1
Basic Information
- Insect
- Andrena flavipes
- Gene Symbol
- -
- Assembly
- GCA_963971345.1
- Location
- OZ020479.1:51518765-51519346[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-08 5.8e-06 26.7 0.0 4 38 20 55 19 60 0.92 2 2 4.1 1.6e+03 -0.4 0.0 14 22 140 148 131 150 0.66
Sequence Information
- Coding Sequence
- ATGCAAACCATATACGTCCGAAAATTAGGATCTGTTAGAGGACAATGgacaatacaaaatttaaCGGAAGCCATTAGAAGGATTGAAAACGGAGAACTTCGAGCCAGTGAAGCTTCGCGACATTATGGGATACCTCCCACAAGTCTCCGGCGAAGGAGGCTATCAAATAATTTCGATAAGATATCGCTTGGGCCCCAAGGAATTTTGGGACGTCACAACGAAAAAAGACTAGTTGCACACATTCAACGTCTTCAGGAAGCTGGTTTTGCTCCCGATAGGACAACAGTCAGGCGTACAGCATTTGAATTCGCTGAAATATTAGGGATCCAGCATAAATTCAATAGGGAATCTCGATTAGGAGGCTATGATTGGCTTAATTCCTTTTTGAACAGGAATAAGGAATTATCCATCAGACAGTCCGAAGGCTTGTCACTAGCTCGAGCTACAGACATGAACAAGAAAGAAGtagattttttcaaattgcTTACTAAAATATATGATGAGCATAATTTTTACACGAAACCAGGAAACATATTTAATATGGACGAAACCGATTGCCAATTAAACAACAATCCTGGATAA
- Protein Sequence
- MQTIYVRKLGSVRGQWTIQNLTEAIRRIENGELRASEASRHYGIPPTSLRRRRLSNNFDKISLGPQGILGRHNEKRLVAHIQRLQEAGFAPDRTTVRRTAFEFAEILGIQHKFNRESRLGGYDWLNSFLNRNKELSIRQSEGLSLARATDMNKKEVDFFKLLTKIYDEHNFYTKPGNIFNMDETDCQLNNNPG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -