Afla006254.1
Basic Information
- Insect
- Andrena flavipes
- Gene Symbol
- -
- Assembly
- GCA_963971345.1
- Location
- OZ020479.1:55886704-55887878[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-10 7e-08 32.8 0.1 1 44 18 61 18 62 0.96 2 2 2.1 8.5e+02 0.6 0.0 11 22 137 149 127 149 0.87
Sequence Information
- Coding Sequence
- ATGCCAActgaatataaaagaaaatctAACGCTAAGCTTAAAGCTCAGTGGAGTGAAGAAACTTTGATCGAAGCATTACATCGAATAAAAGCTGGTGAAATCGGCAAACGTGAAGCGGAACGATATTATGGAATTCCGGCAAGAACTTTAGGAAGACGTCTTGAAACTAACAACACTACGAAAACTCGATTAGGACCTGATTGCCTTTTGGGATACAAAAACGAAAGACGTCTAGCCGAACATATTATGCGTTTGAGCGAAGTGGGCTTTTCTCCCGATAGAGTAGGAGTACGTAAAATGGCATTTCAGTTTGCCGAATCTTTGGGAATTAATCATCCGTttaataaagaagaaaaagtaGCAGGATGGGCTTGGTTTTATAGCTTTCTTAGAAGAAATCCTCATCTCTCAATTAGAAAAGGAGAAGGTTTATCAGTTGCCCGAGCCCTCGGCGTAGGAAGAGAAATAGTTAATGGCTACTTTGAAATACTAAGGGCTGAACTTTCCAAATATGAAGTTATGAACAAGCCACAAAATATTTGGAATATAGACGAAACAGAAAAGCACCAGGAAGGAATATCCTTATTCTTGATGGGCACGCAagccatacaaattGAAAGTTAA
- Protein Sequence
- MPTEYKRKSNAKLKAQWSEETLIEALHRIKAGEIGKREAERYYGIPARTLGRRLETNNTTKTRLGPDCLLGYKNERRLAEHIMRLSEVGFSPDRVGVRKMAFQFAESLGINHPFNKEEKVAGWAWFYSFLRRNPHLSIRKGEGLSVARALGVGREIVNGYFEILRAELSKYEVMNKPQNIWNIDETEKHQEGISLFLMGTQAIQIES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -