Afla009940.1
Basic Information
- Insect
- Andrena flavipes
- Gene Symbol
- -
- Assembly
- GCA_963971345.1
- Location
- OZ020480.1:25377992-25379449[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9e-12 3.6e-09 37.0 0.0 6 35 19 47 15 55 0.90
Sequence Information
- Coding Sequence
- aTGGCGAGcaacaaaaagaaatataactTATATCGGTACTCAGATAGTGATGTAGATAAAGCTTTAGCGGATGTAAGAAAAGGAACAAGTGTAGGAAAGGCAGCCAAAGAATATGGAATTCCAAAGTCAACGTTACATGCCAAATTAACAGGAAAGGCTCCAGAACATTGCAAAAAGGGTCCAAAACCAATTTTAACCACCGAAGAAGAAAGTCGCTTAGAGGGATGGATTTTGAACAAAGCTAGACTAGGCTTCATTATGCATCCTGATGAAGTAAAGGATGCTGTACAAAAAATACTTAACGAAGCATCGCGAAAAACCATATTCACTAACAATAGGCCAGGAGATAAATGGCTGCAACTATTTTTGAAGAGACACCCCGAAATAACGAAACGAAACATCAAAATCATATCGAAAGGACGACCACCGGTCACCGAAGAAAATTTGAGAGAATGGTCGCGGGAATTAAAATCGTATTTAGAGGAGAATGGATTCGCCGGTGTTTTAGAAAGACCGAAAAGTATATTTAATGGCGATGAAACTGGTATTCAGCTCTCTCCTAAAAGTGGACAACTTTTAGGACTAAAAAATGAGAaagatttttatgaaatttcatcgggaaaagaagaagaaacgttGACTGTTCTCTGTACATTTTCTGCCGCAGGCGATGCACTGCCACCTATGATTAAGTTTCCGTACAAGAGAATTCCAGCCCTTGTATCAGATTCAGTTCCGGAAAATTGGCCTATAGGGCGATCGGACACAGGGTGGATGGTGTCGAGCACGTTTTATGAATATATCGCTAACAATTTCTATCCTTGGTGTGTAAATAATGGAGTAGAGTTTCCGGTGATATATTTCCTCAATGGCCACAAATCTCATCTCACGATGGAACTCAACGATTTTTGCATCCAACATAATATAATTCTCTATTCGTTGTATCCTAACTCTAGTCATATAACGCAACCCTGTGACGTTGCGATATTCAGATCCTTAAAATGCAAATGGAGACAAGTAGTACGCGATTATAAGCAGAGTACTCAAAAATCAGTTACAAAGGCAACGTTCGCTCCATTGTTTAAGAAAGCTTTCGATGAAATAAGTGATTCGTCGATAAGAAATGGATTTAGAGCTTGCGGATTGTATCCGTTCGATGAAAACGCAGTTCACTATCAGAAGTGCATATCAACTCGGCGAACAGAATTAAATTCTACAAGTGCAGTCGAAAATCCAACCAGCTCTCTCACCTACGCTGACTTTCTTTCGACTAAAAAATTTTTTGATCACTTTGTTGACGATGAGAAACTAGAAGAATTTGTAAACATGGGAAACAAAAATGAAACGTGCAATGACCCTGTATATATCCTATGGAAAACTTGTATCGATGAACTAAACGATTGTTTGatagacaataattcagttaAAATTGAACTGAAACCTAACTTTTGTTGTTGA
- Protein Sequence
- MASNKKKYNLYRYSDSDVDKALADVRKGTSVGKAAKEYGIPKSTLHAKLTGKAPEHCKKGPKPILTTEEESRLEGWILNKARLGFIMHPDEVKDAVQKILNEASRKTIFTNNRPGDKWLQLFLKRHPEITKRNIKIISKGRPPVTEENLREWSRELKSYLEENGFAGVLERPKSIFNGDETGIQLSPKSGQLLGLKNEKDFYEISSGKEEETLTVLCTFSAAGDALPPMIKFPYKRIPALVSDSVPENWPIGRSDTGWMVSSTFYEYIANNFYPWCVNNGVEFPVIYFLNGHKSHLTMELNDFCIQHNIILYSLYPNSSHITQPCDVAIFRSLKCKWRQVVRDYKQSTQKSVTKATFAPLFKKAFDEISDSSIRNGFRACGLYPFDENAVHYQKCISTRRTELNSTSAVENPTSSLTYADFLSTKKFFDHFVDDEKLEEFVNMGNKNETCNDPVYILWKTCIDELNDCLIDNNSVKIELKPNFCC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00087025; iTF_00085214; iTF_00088702; iTF_00087856;
- 90% Identity
- -
- 80% Identity
- -