Acam015213.1
Basic Information
- Insect
- Andrena camellia
- Gene Symbol
- -
- Assembly
- GCA_029448645.1
- Location
- CM055679.1:45635300-45638054[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 6.4 6.2e+02 1.7 0.9 1 10 313 322 313 335 0.76 2 15 2.1 2e+02 3.2 0.4 1 23 343 366 343 366 0.89 3 15 0.012 1.1 10.3 1.7 1 22 372 393 372 396 0.88 4 15 0.098 9.4 7.4 5.3 1 23 478 500 478 500 0.93 5 15 0.0089 0.85 10.7 0.5 1 23 507 530 507 530 0.91 6 15 0.0011 0.1 13.6 3.1 1 23 536 558 536 558 0.97 7 15 0.00019 0.018 16.0 2.4 1 23 564 586 564 586 0.98 8 15 5.4e-06 0.00052 20.8 2.2 1 23 592 614 592 614 0.98 9 15 0.0013 0.12 13.3 0.1 1 23 627 650 627 650 0.95 10 15 0.00015 0.015 16.2 4.3 1 23 666 689 666 689 0.96 11 15 0.00078 0.074 14.0 1.4 1 23 697 720 697 720 0.97 12 15 0.00071 0.068 14.1 0.7 1 23 726 748 726 748 0.97 13 15 0.00022 0.021 15.8 2.4 1 23 754 776 754 776 0.98 14 15 4.5e-06 0.00043 21.0 1.5 1 23 782 805 782 805 0.98 15 15 0.001 0.099 13.6 0.7 2 23 811 832 811 832 0.97
Sequence Information
- Coding Sequence
- ATGGATGCATTGATATGTCGTTTATGCGGTATAAATCTTGCGGAGGGAAAGTCCAAAGATATCTTTGAAGGATCCTCCGACttgatacataaaataaaagagactttaccAATTCCAATATCTATAGAAGATAATGGTTCGAAGCACGTATGCTTGGCATGTTATGATAAAATTGTCCTTTATCATAAATTTATTCAGGACGTAGTGGAGCATTCTAAGACGTTAGAAAATGTGTCACAAATCAAGTCCTTGATTAATTTGTCTAAAGAGGTGacagaattttcgaaaattcatAGCGACGCTGTATATACATGTCCGAACTGTAATATAGACTTAATGATTTTGTTAGTCAGTAATTCACAAGGCTGTGATTATACCTTCCAAATCTCGCTAGCAGTGGTAAATCGTTCTGAGAGGAATCATATCGTAAAGGAAAAGAATATTCAGATACATAATAATGTGATACATCTGAATGATCCTAAGAAGGACAACACGCATGTGAAAGATGAGAAAGCGACAGACATGAATGATATTGAGAATATATCTAATCAAATGAATCTTACGCTGCTCGCGTTACAAGATGAAAATGTAAGTTATGACGATATATTGTCTGGTAAAGAAGTCTCTGAAATTGGAATGCAGAGGAAAACAAAGAGAAAGCACGAGGAATGTAATTCTTATGATCATCCTGTTACACCAGTAAAGATACTGAAGTTGAAGGAAATATCATATGTGCCTAATGAGAATTTAGCGACCAGTGATTACAATTCTACAGACACGTTAATAAAGCTTGAACCTGAAAATGATAATGCTTATTGTCTAGACAGCGAAACTGATTGCAAAAGTGAGAAGGATACTTATACAATTGAATCGCAAGATATATTCAAAATGGACAACGTGCAAGAAGAaaatgatatatataaatcttgcCTGAAGTATGTGTGCAAACTGTGCGGAGTGCGCTATCTATCGCATCTGAAATACGAGTTTCACATGGAGAGACACAAATTGGGTAAAATATATAAGTACGAATGCATTGTATGTGACAAGGAAGCGAGTAGTGAAAACCTATTATGGGATCATTATTATCATACACATAAGAGTTTACAACGTTATATTTGCATCGAATGCGGGAAATTGTTTACGAAGCGATCCAGACTGAATAGTCATCAAAAGAATTACAAACATGCTGGTGTGAAACTGATACAAGTCGGTACCAGTGAAGATACTATTAGTAACGATGATATAGAAAAGGCTATAGCGTCAGCAAAGGAAGGAAAGATTTCTGTGAACTGCAATCTCTGTGGAAAATTGATCTCAGATTTAGATCCGGATGCCATTAACGACTTAGTCACGTGTGCTAATTGCGAAGACTCGACGCTTTCTTTGATGGTGGATGGGAATGAAACGAAAGTAATCTCTCCTAGACAGTATCATTGTTCTAAATGCCCTAAACACTTTGTACGGAAAGAGAGACTGGAGTTTCATGAGATGAGGCATAATGAGAATATGAATGAATTTATTTGCAGTACTTGTGGAAAGGACTTCAGAGCGGAGAATTCGTTGTACGAGCATTATCTTTTCGTTCACAAAGGAGCGAGACCCCATATCTGCGAACTGTGCGGTAAATCATTTCAATTGAAAGCCAGATTAAAAGAACACCATCGAATTCACACTGGTGAAAGACCGTACCAATGCGACATTTGTGGTCAACGATGTAGAACTACGAATGCTTTGAAGCTCCATAAGAAAGTCCACTCTTCTCATAACAGGTATACTTGCAACGTATGTAATAAATCATTCAGTAAAAAGCAAAATATGAACGAACATTTAGAGAAGCATTGGAAGAACGACAAAAATGTAACGTTACCGCAATTGTTCACGTGTCCGATTTGTTTAGAAGATTTTCCGACATATCGCATGTTAAAGTATCACATGATAGAAGTTCATGAGATAAATAATCAGGACCCAATTCTGACGAAACAGAAGCCATGGTACGAATGCACGGAGTGCCATGAGAAGTTCAAGCATCAAATGTCTTTAAAGGCTCATAAAGAGAGAGTTCACGAAGGGAAAGTAAATCCTATTTATCACTGTGACATATGTAACGCTACGTACAGAGTCAAGCAACTTTTAGTAAATCATATTAAAAGTAAACACAACGGCGAAAGGCGTTATAAATGCGCACAATGCGAGAAAGGATTTAACGATACTAAATCTTTATACAACCATGTACTGTTGCATACCGGTAAAAAACCGTTTGTCTGTGAATACTGTAACGCGAGTTTCAGAAGGAAAGATTCCAGAGATCAGCACCGCAGGAAACATACAGGCGAACAGCCTTATCAATGTCCAGACTGTGGCGAATCATTTTCTACTTACAACAACAGATCTAAACACCGAAAGCGAGAACACGGAGAAGGAGACCCGGAATGCCCTGACTGCGGGGAGAAATGTAGCAATcaactagaaattagaattcATTTGAACAAACATCTTGGAGAAAAATTGAAGCAATTGCAGAGCATAAAATCTGAAGGGGTGTAG
- Protein Sequence
- MDALICRLCGINLAEGKSKDIFEGSSDLIHKIKETLPIPISIEDNGSKHVCLACYDKIVLYHKFIQDVVEHSKTLENVSQIKSLINLSKEVTEFSKIHSDAVYTCPNCNIDLMILLVSNSQGCDYTFQISLAVVNRSERNHIVKEKNIQIHNNVIHLNDPKKDNTHVKDEKATDMNDIENISNQMNLTLLALQDENVSYDDILSGKEVSEIGMQRKTKRKHEECNSYDHPVTPVKILKLKEISYVPNENLATSDYNSTDTLIKLEPENDNAYCLDSETDCKSEKDTYTIESQDIFKMDNVQEENDIYKSCLKYVCKLCGVRYLSHLKYEFHMERHKLGKIYKYECIVCDKEASSENLLWDHYYHTHKSLQRYICIECGKLFTKRSRLNSHQKNYKHAGVKLIQVGTSEDTISNDDIEKAIASAKEGKISVNCNLCGKLISDLDPDAINDLVTCANCEDSTLSLMVDGNETKVISPRQYHCSKCPKHFVRKERLEFHEMRHNENMNEFICSTCGKDFRAENSLYEHYLFVHKGARPHICELCGKSFQLKARLKEHHRIHTGERPYQCDICGQRCRTTNALKLHKKVHSSHNRYTCNVCNKSFSKKQNMNEHLEKHWKNDKNVTLPQLFTCPICLEDFPTYRMLKYHMIEVHEINNQDPILTKQKPWYECTECHEKFKHQMSLKAHKERVHEGKVNPIYHCDICNATYRVKQLLVNHIKSKHNGERRYKCAQCEKGFNDTKSLYNHVLLHTGKKPFVCEYCNASFRRKDSRDQHRRKHTGEQPYQCPDCGESFSTYNNRSKHRKREHGEGDPECPDCGEKCSNQLEIRIHLNKHLGEKLKQLQSIKSEGV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00084773;
- 90% Identity
- iTF_00084773;
- 80% Identity
- -