Basic Information

Insect: Andrena camellia
Gene Symbol: su(Hw)
Assembly: GCA_029448645.1
Location: CM055679.1:47263265-47266584[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.005 0.47 11.5 0.1 1 20 88 107 88 109 0.95

2 13 7.5e-05 0.0072 17.2 1.0 1 23 214 237 214 237 0.93

3 13 1.2e-05 0.0011 19.7 4.9 2 23 244 266 243 266 0.95

4 13 0.00086 0.083 13.9 3.5 1 21 272 292 272 297 0.94

5 13 7.6e-08 7.3e-06 26.6 1.1 1 23 304 326 304 326 0.98

6 13 3.4e-05 0.0032 18.3 1.6 2 23 336 357 335 357 0.97

7 13 0.00046 0.044 14.7 0.5 2 23 364 385 363 385 0.97

8 13 1.6e-06 0.00015 22.4 2.5 1 23 391 413 391 413 0.99

9 13 4.5e-06 0.00043 21.0 1.7 1 23 419 441 419 441 0.94

10 13 3.4e-05 0.0032 18.3 1.4 1 23 447 470 447 470 0.94

11 13 4.8e-05 0.0046 17.8 1.2 1 23 476 498 476 498 0.95

12 13 6.4e-08 6.1e-06 26.8 1.4 1 23 504 526 504 526 0.99

13 13 0.00083 0.079 13.9 1.4 5 23 536 555 533 555 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.005	0.47	11.5	0.1	1	20	88	107	88	109	0.95
2	13	7.5e-05	0.0072	17.2	1.0	1	23	214	237	214	237	0.93
3	13	1.2e-05	0.0011	19.7	4.9	2	23	244	266	243	266	0.95
4	13	0.00086	0.083	13.9	3.5	1	21	272	292	272	297	0.94
5	13	7.6e-08	7.3e-06	26.6	1.1	1	23	304	326	304	326	0.98
6	13	3.4e-05	0.0032	18.3	1.6	2	23	336	357	335	357	0.97
7	13	0.00046	0.044	14.7	0.5	2	23	364	385	363	385	0.97
8	13	1.6e-06	0.00015	22.4	2.5	1	23	391	413	391	413	0.99
9	13	4.5e-06	0.00043	21.0	1.7	1	23	419	441	419	441	0.94
10	13	3.4e-05	0.0032	18.3	1.4	1	23	447	470	447	470	0.94
11	13	4.8e-05	0.0046	17.8	1.2	1	23	476	498	476	498	0.95
12	13	6.4e-08	6.1e-06	26.8	1.4	1	23	504	526	504	526	0.99
13	13	0.00083	0.079	13.9	1.4	5	23	536	555	533	555	0.90

Sequence Information

Coding Sequence: ATGGAAGGCGTGCCCCTTGGCATAGGCCATTTTGTAGTGCGTTCAGGCTCGCAGGGATTGTTCCTTCAGGGGCAAGTGGGATTCATGATCGAAGAGATCGTGAAAGTGGAGGAGACGACGGTGCTGATGAAGAACGCGGCTTTGGACAGTTTGTTTGATGCGGATAATCCGGAAGAAACTATGGTAATGTCCATCGAAGATGAAGCTGCCGACGTGAAAGTTAACGCCCAAGGCGATCAAATTATACAGATCGTCACGGATTACGAGTGTGTAACGTGCCGCCGTGTTTTCCAGTCTCAGAATATGCTGAAGGAGCATTTGGACATTTGCAGAGAAGAAGAGGATTCCATGTATATGTTGGAGCTGAGTAGCTTTAAGAATTATGATTCGGAAGAGGACGGGCGGGAGGGGAAGGATGGGAGCATCGAGAGGGACGAGAATGACGAGAATGACGAGAATGACGAGAATGACGAGAATGACGAGAATGACGACAATTCGGAATCTGCTGATAATAACGTTGGCGAAGAGTCTAATCCCGATCGGAGTGGCAATAATAGCGGGACAGTAATCGTGCCTGTACCCGATACCCAATGCCATTGTTGCGCCGAAGAGTTGAGCACCGCGCACAGCGGCGGTAAGCACAAGTGCTCGAGCTGTGATCTATCGTTCAAGGAGAAGTCGTCTCTGGAACGACACGTCGTAGTGATTCACTGGCAGTGCGATTCTTGTACTTGTAAGGAATGCGGAGAAACGTTTAGAGATAAGAAATCGTTGAACAAACATCGTTACACTACTCACGGCGATCGAAAGATTTATAGATGCGAACCCTGTGATACATACTTCTCTCGGAGCTATCATTTAAATCGTCATATAATGCAGTCCGGATGCCACGGGAACATTCTCAATACGTTCAGTTGTCTAGTTTGCGAGAAAGTATTTACACGGAAGGACAACCTGCGCGAACACTTGCGCACTCATACTGGGATAATTAACAGGCAAAAGAAGCCGTGTAAATATTGCCCTAAAGAATTCTGTACGAACCAGCAGCTACTGATTCACGAACGTGTGCACACAGGAGAACGACCAGTTCAATGTGATTTATGCCCGAAAACATTCTTATCGTCTCTTGCATTGAAAAAGCATAGACGCGTACATACAGGAGAGAAACCATTTGAATGCAAATATTGCCAGAAGAAGTTTGCCGCTCGAGAAACCCTGAATCGTCATCAGAGGACTCATACTGGCGAAAAGCCACACGCTTGCCAGTATTGTGGCAAGTCTTTCATCCAGGCAGCTCAGTTAAGGGCGCACATATTCCACCACACTGGCGAGAATGGCTTCTATTGCGACATATGTGGGAAAGCGTTCAATCGGAGAGCTCGTCTAAACGTTCACAAGAAGTTCTACCACGAAGGAGTAACACCGTTTACGTGCCAAGTGTGCAAGAAGAGATTCATAAGGAGGGAGGATCTCGTTAAACATTCTTTACTTCATACAGGAATTAAACCATTTAAATGTGATAAATGTGAGAAGGGCTTCTCCACGAAGTCTTCTCTACAAGCTCACCTAAATACTCATAGAAGGGAACCGCCACAGTCGTGTATCGAATGTAACAGAGTCTTCATTCGACAAGATTGCTTGATGAGACACATCAAAGCGAAACATCGCGAGCTGTTGGAAGATGTCATGAACGAGGTGGAGAAGAAGCATTTAAAAACACACATGTTTAATATTGCATCGAACGCCGCGGAGAGGACGAAAAACGGAGAGTCCAGTAGACTCTCCACCGATCAATTGTTGCAAGCTATTTCGGACCTTCTAAAGATATTGATCGACGACGAAACCCTTCAGCTGTTTGGTTGGCCAGACGCACCTACTCAAGATATCTTGGAAGCTGTAATTAGAAGATGCGGTCACCAACCGTTAACATCCGATAGCGATTTACCGTTAACCGAACGATTGAGGAGAAACGTGAAGCTGCTGTTCAGCGTTGTCGTAGAAGATGTTACAGTGAAATCTCTCTTGACAATAAAAACAGTGGACGATGTTATTACACACGTTCTAGAACTTTCCAACGAATACAAGCCGAATTTGTAG
Protein Sequence: MEGVPLGIGHFVVRSGSQGLFLQGQVGFMIEEIVKVEETTVLMKNAALDSLFDADNPEETMVMSIEDEAADVKVNAQGDQIIQIVTDYECVTCRRVFQSQNMLKEHLDICREEEDSMYMLELSSFKNYDSEEDGREGKDGSIERDENDENDENDENDENDENDDNSESADNNVGEESNPDRSGNNSGTVIVPVPDTQCHCCAEELSTAHSGGKHKCSSCDLSFKEKSSLERHVVVIHWQCDSCTCKECGETFRDKKSLNKHRYTTHGDRKIYRCEPCDTYFSRSYHLNRHIMQSGCHGNILNTFSCLVCEKVFTRKDNLREHLRTHTGIINRQKKPCKYCPKEFCTNQQLLIHERVHTGERPVQCDLCPKTFLSSLALKKHRRVHTGEKPFECKYCQKKFAARETLNRHQRTHTGEKPHACQYCGKSFIQAAQLRAHIFHHTGENGFYCDICGKAFNRRARLNVHKKFYHEGVTPFTCQVCKKRFIRREDLVKHSLLHTGIKPFKCDKCEKGFSTKSSLQAHLNTHRREPPQSCIECNRVFIRQDCLMRHIKAKHRELLEDVMNEVEKKHLKTHMFNIASNAAERTKNGESSRLSTDQLLQAISDLLKILIDDETLQLFGWPDAPTQDILEAVIRRCGHQPLTSDSDLPLTERLRRNVKLLFSVVVEDVTVKSLLTIKTVDDVITHVLELSNEYKPNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00088238;
90% Identity: iTF_00086559;
80% Identity: -