Basic Information

Insect: Andrena bicolor
Gene Symbol: -
Assembly: GCA_960531205.1
Location: OY482665.1:50923577-50930052[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 4.4e-05 0.0037 17.9 0.6 1 23 355 378 355 378 0.97

2 8 0.00055 0.046 14.5 1.8 1 23 394 416 394 416 0.97

3 8 0.00012 0.0097 16.6 1.6 1 23 440 462 440 462 0.97

4 8 0.0085 0.71 10.7 3.2 1 23 470 492 470 492 0.98

5 8 0.0017 0.14 12.9 0.2 1 23 533 555 533 555 0.97

6 8 7.8e-06 0.00065 20.3 0.8 2 23 561 582 560 582 0.97

7 8 5.7e-07 4.8e-05 23.9 0.7 1 23 588 610 588 610 0.95

8 8 0.00025 0.021 15.5 1.0 1 23 616 638 616 638 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	4.4e-05	0.0037	17.9	0.6	1	23	355	378	355	378	0.97
2	8	0.00055	0.046	14.5	1.8	1	23	394	416	394	416	0.97
3	8	0.00012	0.0097	16.6	1.6	1	23	440	462	440	462	0.97
4	8	0.0085	0.71	10.7	3.2	1	23	470	492	470	492	0.98
5	8	0.0017	0.14	12.9	0.2	1	23	533	555	533	555	0.97
6	8	7.8e-06	0.00065	20.3	0.8	2	23	561	582	560	582	0.97
7	8	5.7e-07	4.8e-05	23.9	0.7	1	23	588	610	588	610	0.95
8	8	0.00025	0.021	15.5	1.0	1	23	616	638	616	638	0.98

Sequence Information

Coding Sequence: ATGTCCTCCCTCGATTATCTGGacctgtgtcggctgtgtctcGTGAAGGACCGTGTTTCGGTGCCGATTTTCGAGGGCGAGGGAGACGTACGGCAGATTTTCCTCAAGATCGCCGCCTGTCTACCGGTCAAGGTTGCAAGAGAAGACAAATTACCCAAGAAAATATGTGACGATTGCGTGTATAAAGTAGAATTATTTTATCAGTTTTGGAATACGACAGCAAACGCAGAGAAACAACTTTTACAATGGCTAGGCGAAGTTGGAATGGACGGCAAACAGGGTTACGTTACCAATACTCTCAATCAGAATGTAATGAAACAAGAGCAGAGCGCAGAGAACAGGTTAGACGGTAGTGTGATGCAGCAAGTTAGCGAGCATCAGAACAACATGGGTATGGGTATGATGGACAACATGGGCCTGGGTATTCCTATGATGATGTCCAGCGCGAATCAACAACAAATAACCTCAGTTCCTATGGACACAAGCGGCAATTCTGTACAAACTGTTCAGGCGGTGCCTGGTCCGAGTTCACAAACCACGCATAACCAAATATCGCAAAGTCAGACGAGCTCTACGCAacaagaggaggaagaggaaagtAGCGAAGACGAAGAAAACTCGGATGAAGAATGCGATGGAGATGAAGGCCTACCTGTAAAAGAAGAGAGCGAAGAAGATCCCAATAGTAGAACCATAGAGCCTACGACTTTTGTAAATGTTTCCCTGGCATGCGATGAGGCGGGTCCTTCGGGTCTACAGCAACAGAAAATCTCAGATATCCCTGAGATGCCAATGCAACAACCAGCCGATGGGGATCCCAAATCTGGGGAAGGAAGCGAGACCTTTGGCGGATTGTCGGGGATGCTGCGTCAGATACTCTCGCCGTCACCCGAGACGGGGGACGTCTGTTTACCCGTCAGTTGTACCCTGCTTCAGAACAACTGTATATACTCCAATCAGTCGTCGATGATGCCCTCGGCGTACCACACTGTCCCGTCCCACTTGCCCTCCATTAGTCCCGACCAGAATCTCATGGATCACGTGCAGATAGTCGTCGAGTCCCATCCGTGCCCCACCTGCGGCCTCGAATTTCGAAGCGCCCTAAAGCTGAATTACCATATAAGAACCAGCCATTCCGTTCTGCCCGAGTTCGAGCACACTATGGAGAACCCCGTGAGGTACTCGTGTAACGTTTGCTCGCGGAGCTTCTACGCCCTGAGCCACTTGAGGATGCACGAGGTGACGCACAACGCGCCCGCTACCTCTTGCCCGTCGCCGATCCAAACGATGGCGACGTCGGTGAACGTGGAGAAGACGTTCGCCTGCGATCGCTGCCAGGCCAGTTTCCGCTACCGCACGCTCCTCGAGCGGCACAAGAGGATGCACGAGGTCGGCCAGGAGAAGCCTTACTCCTGCCCCCGGTGCCTGATGCGCTTCGAGACGCGAAATCTGTACAATCATCACGCGAAAACACACAAGCCGATTCTAGGGGGTAACGACAGGATCGCCGACACCGCGGTGTCTTCCGGCGATCCCGTCACTAGCAGTATTAGCGGCACTAACGTCATGGCATCGTCCAACAAATCGATAGTGTCGTACCCGTGCGACTCCTGCTCCAAACAGTTCGCCAGCATCGAGTCTTTGACCACGCACAAGGCCGTCCACAGGTCCAGGCCTCTCGTGTGCGACGTATGCGGCAAAGGTTTCACTCATCGCAAATATTACGTGGTGCATCAGCGCATCCACACTGGCGAGAGACCGTACCTTTGCGCCATGTGCGGCAAGTCGTTTACCCAGGCGTCCACGCTTACCGTCCACCGTCGATATCACACGGGGGAACGGCCATACACTTGCACGCTGTGTGGCAAAGGATTTGTTACCAGAACGATCATGCTTAATCACATGAAGAAGCATTGA
Protein Sequence: MSSLDYLDLCRLCLVKDRVSVPIFEGEGDVRQIFLKIAACLPVKVAREDKLPKKICDDCVYKVELFYQFWNTTANAEKQLLQWLGEVGMDGKQGYVTNTLNQNVMKQEQSAENRLDGSVMQQVSEHQNNMGMGMMDNMGLGIPMMMSSANQQQITSVPMDTSGNSVQTVQAVPGPSSQTTHNQISQSQTSSTQQEEEEESSEDEENSDEECDGDEGLPVKEESEEDPNSRTIEPTTFVNVSLACDEAGPSGLQQQKISDIPEMPMQQPADGDPKSGEGSETFGGLSGMLRQILSPSPETGDVCLPVSCTLLQNNCIYSNQSSMMPSAYHTVPSHLPSISPDQNLMDHVQIVVESHPCPTCGLEFRSALKLNYHIRTSHSVLPEFEHTMENPVRYSCNVCSRSFYALSHLRMHEVTHNAPATSCPSPIQTMATSVNVEKTFACDRCQASFRYRTLLERHKRMHEVGQEKPYSCPRCLMRFETRNLYNHHAKTHKPILGGNDRIADTAVSSGDPVTSSISGTNVMASSNKSIVSYPCDSCSKQFASIESLTTHKAVHRSRPLVCDVCGKGFTHRKYYVVHQRIHTGERPYLCAMCGKSFTQASTLTVHRRYHTGERPYTCTLCGKGFVTRTIMLNHMKKH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00118215;
90% Identity: iTF_00360430;
80% Identity: -