Abic002400.1
Basic Information
- Insect
- Andrena bicolor
- Gene Symbol
- -
- Assembly
- GCA_960531205.1
- Location
- CAUIJW010000138.1:1540058-1554528[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-08 2.5e-05 24.2 0.0 2 33 11 41 10 53 0.88 2 2 3.8 2.6e+03 -1.5 0.0 16 24 124 132 121 133 0.87
Sequence Information
- Coding Sequence
- atgccACCAATAAAGAGAAAATCATATACTCAAGAAGCTGTAGAGAAGGCAGTCAATGCTGTCAAAAACGGAATGCCATTAAGAGCTGCTAGCAAAGAGTATAATGTTCCCAGAAgtactatttttattaaaagcCAAGGGAAGATTTCCTTACAGACAACAATGGGTCCATCCACTTATCTGtccaaagaagaagaagaaagacttTGCGAGTGGATAATTTATATTGGCCAGCGAGGATTTCCCATCACAAAAACCAAGCTGTTAGACGGTGTTCAATCTTTAGTCATCGAACTGGGAAGAGAGACGCCTTTTATCAACAACAGACCAGGCCGTCACTGGTTTGAAGCCTTTCTTCGGCGTCACCCACAATTATCAATTAGACACGCTCAAACTTTGACAAGCACTCGTGCCTCTGTTACAGAGGTAGCACTACGTAGTTGGTTTAGAGAAGTGCAGCAGCATTTGATGGCACTAAATTTAGTGTTAATTGAGCCATCAAGAGTATTCAATTGTGACGAAAGTGGTTTTCGACTCTGCCCCGAACTAGGCAATGTGATTGTAAAAAAAGGTGCCAAGTCAGTGTACTCTGTGGTCAGTGGTGATGAAAAAGAAAGCATAACAGTATTGTTTATGGTCAATGCTGCAGGAACTATGGTCCCACCCATGGTGTTACATGGCTATAAAAGAGTGCCGTATAATGTTTCTAACAAAATGCCAAAGGACTGGAGCATTGTTAACAATGTAAATAATAATGAGTTAGGCGTTGACAATAATGTGCTACAAACCTGGGATTCTAATGTGGAAAGGGATGATTGCATCATAATAAATTTAGATGAGGATCAAGGAAGCAATCTGAAGGAAACTAATAACGACGTTAATGTACTTAACATTACTACATTAGAATGTAACTTAACTGACGAAATCATAGTGGACAGGAAATTTGAAGACTCTAATAGTGATGCCATTCTGaTGAAGCAGGCAATAATAGACGTGGGCGAAGGAAACTTTGGAATGGATCCACAGAGGAAGGGGGAGGAAGCGAGGGAGAAAGAAGGGGGTGTAAGGGAGAGGTCGACAAGGGAGGAAGAAGGGAGTATAAGGGAGAGGGCGACGAAGGATGAAGAAGGGACTGTAAGGGAGAGGGCGAcgagggaggaagaagaaagcaAAGTGTGGCGCCGAAAATATAATAAGATAGACGCCGGCGAGAATGGCACAATGGTGGCCGTGGAGAAAGGCGCGGTGGCCACAGATCAAGCCGCGGGGGCACCCGAAGAGGTTGGAGCGGTGGCCAAGGACCAAGCCGCGGGGACACCCGAGGAGGGCTCCATTCTCGGCCCTACTCTCTTCAATATATACATCAATGATTTGCCTAGACGCGCGGACTGCGACTCTACGCTGATGACACAGCGATATACACTTCCTCGTGGCACCTCTCCCAGCTGGTCCTTCGTCTCCAGACCTACCTGGATCAGGTTCTCCAGTTCTTCTCATCATGGAAACTCCTAA
- Protein Sequence
- MPPIKRKSYTQEAVEKAVNAVKNGMPLRAASKEYNVPRSTIFIKSQGKISLQTTMGPSTYLSKEEEERLCEWIIYIGQRGFPITKTKLLDGVQSLVIELGRETPFINNRPGRHWFEAFLRRHPQLSIRHAQTLTSTRASVTEVALRSWFREVQQHLMALNLVLIEPSRVFNCDESGFRLCPELGNVIVKKGAKSVYSVVSGDEKESITVLFMVNAAGTMVPPMVLHGYKRVPYNVSNKMPKDWSIVNNVNNNELGVDNNVLQTWDSNVERDDCIIINLDEDQGSNLKETNNDVNVLNITTLECNLTDEIIVDRKFEDSNSDAILMKQAIIDVGEGNFGMDPQRKGEEAREKEGGVRERSTREEEGSIRERATKDEEGTVRERATREEEESKVWRRKYNKIDAGENGTMVAVEKGAVATDQAAGAPEEVGAVAKDQAAGTPEEGSILGPTLFNIYINDLPRRADCDSTLMTQRYTLPRGTSPSWSFVSRPTWIRFSSSSHHGNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -