Abic016351.1
Basic Information
- Insect
- Andrena bicolor
- Gene Symbol
- Sry-delta
- Assembly
- GCA_960531205.1
- Location
- OY482667.1:17377485-17378797[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-09 7.5e-07 29.0 0.4 6 37 36 67 33 71 0.90 2 2 7.5 5.1e+03 -2.4 0.0 30 38 96 104 96 109 0.83
Sequence Information
- Coding Sequence
- ATGTGCTTCGATCACCCGGTCGTCTTAGTCTGTTTCGGTCAGTATTATCACGCCGTGAGGACATGTATCCGAAGAAGATACGGGAGATCAGAGCTGGAGCGCGTGAGGGCAGCCATTGAGTACGCGGCTAATCACGGAGTGTCGTTGAGGAAGGCGGCGCAAATCTTCGCCATACCGAAGTCCGTTCTCCAGCGTTACAGCAAATATGAGGCGAGGTCGGTGGGCTTCCTCAACTGTCAGAGGGTCACCTACCCTTGCAAGAACTGCGGCAAGGTCTACAATTACTATTCCAGCCTGGCGAGGCATTTGAAGCACGAGTGCGGCGTCGAGCCCAAGTTCCAGTGCCCTCTCTGCCCTTACAGGACCAAGCACAAGTCCAGCTTGAACACTCACCTGAACGGCAGGCACATGAAGCTCCTGAGCGAGTTCTACGCGGTGCCCAACGGGAACAAGCTGTCCTCGTCCATGGACAGTGGGAACTAA
- Protein Sequence
- MCFDHPVVLVCFGQYYHAVRTCIRRRYGRSELERVRAAIEYAANHGVSLRKAAQIFAIPKSVLQRYSKYEARSVGFLNCQRVTYPCKNCGKVYNYYSSLARHLKHECGVEPKFQCPLCPYRTKHKSSLNTHLNGRHMKLLSEFYAVPNGNKLSSSMDSGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00087553;
- 90% Identity
- iTF_00085258;
- 80% Identity
- iTF_00084884;