Anig005522.1
Basic Information
- Insect
- Anaulacaspis nigra
- Gene Symbol
- -
- Assembly
- GCA_030264675.1
- Location
- JARJDV010004373.1:79308-82200[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.28 26 5.4 4.2 1 20 267 286 267 288 0.94 2 13 1.3 1.2e+02 3.3 0.9 1 23 322 344 322 344 0.93 3 13 2.6 2.5e+02 2.3 3.1 3 19 380 396 380 401 0.94 4 13 6.5 6.1e+02 1.1 1.6 1 23 426 449 426 449 0.91 5 13 2.9e-06 0.00027 21.1 1.0 1 23 504 527 504 527 0.96 6 13 5.6e-05 0.0053 17.0 0.3 2 23 540 562 539 562 0.96 7 13 6.4e-05 0.0059 16.9 1.2 2 23 565 586 564 586 0.96 8 13 2.1 1.9e+02 2.7 2.7 2 23 624 646 623 646 0.93 9 13 0.28 26 5.4 0.0 1 23 711 734 711 734 0.93 10 13 0.0023 0.21 12.0 1.0 3 23 742 762 741 762 0.97 11 13 0.014 1.3 9.5 0.1 3 23 780 801 779 801 0.87 12 13 0.029 2.7 8.5 1.1 2 23 812 833 811 838 0.94 13 13 0.0013 0.12 12.8 3.0 3 23 859 880 857 880 0.89
Sequence Information
- Coding Sequence
- ATGGCGAGTTCAGCGTCATTAAACTTTCGTTCTTGCTGCAGACTGTGCTTGTCTGAGGCTGACTCTGTAACAAGTATGTTTCAAgtgaataatgaaacaaatgatattgtaaacaaaatttctgCGCTTACAAATATCATGGTTACACCTGAAGACAAAATTACTACAAGTATTTGTGATAAATGTTCCACactgataaacaattttgaaagcTTTAAGAATACCTGTGTGGTCAATCAAAATGTACTAAAAAAGTGCTTGCAAAGTTTTGAAGTCAGTTTAATGAATGATAGCATATGTATTAAGGATGAGCCAATTGAAGATGATGTTGTTTTTATACCAGATGATgATGTTGTTGTTAAAGCTGAGAATGAGAATCCACTCACAGTTACATTTGATGAAGATGCAAATGATTTACCACCAATCTTATCACCAATTGTACCTACAGCTGAATTGCTTGCACATTTGAACTCAATAGAACCTGCAGTTCCAACAGAGGAAGTTATGGAAACTGAGCATAATGACGATACAAGATTAGAAGAAACCAGTAGCTTGGTTGATAATAACAATCAGCAAGATAAGCTTGAATTTGCAGCTGGCTTACAGTTGCAGTCCAGAATGGACACTATCAATATTGAGTCCATGACATCAGCTGAGCTTGAATATGCCAAGAAAATGGCAATATTTTACAGTATTAAGATGACAAAACGGTGTTGTTGCCATAACACATTGTTCAATACTGAGAAATCATTAATGCATCATTTTAAGTGTAGGACccattatatattatttcctTTATTTACATGTCAGCATTGCTTTACATCATGTAACACAAATGTACAATTTGGAAAACATAGAAGTGCCTGTACGATGAGAAATGGAGTCgtgaatgaatttgaaaatatttaccaagTCGCCAACAAGTTTGAGCGGGGGATAAATAAACATCGATCATATCAGATGTTTGTCTGCATGTTGTGTGAAAGGGCATATCGGATATTTGAATTGTATTGTCAGCATGTGGAGGAGCACCTTACTGAATATTCGCAGAGGACGGTTTGCTTATGCAAACGGAAATTTGACAATacgaatatttacaaacagcATCTGTTCAGTAGCTGTATACTGAAGCAAGGATGCGATATATGCGTTGAGAACTTTGACACAGTGCACGAGTTCAAACGGCATTGTTTGGAAAAGCATGACAAGAATGATGGGCTTTCTTATCCCGTTCACGAAGATTTCCAGATATTTGATATTCCGTTTGAACCACAGTATGCATGTGTGGAGTGTAATATGAAATGCTTAAAGGAGCAATTCCTGATCAGCCATCTGAAAAGTAGTCATACATATGATGAGGAAAATGCCATCCGCGTTGCCTCGGATTGTTTTGTTGGCCGAACAGATTCGGAGGATGCATCGCTTGCTGTAACATCAACTGCCCCTGAATCAGACGCTTTATTACCCGATTTAGTAATGTCGGTACCAACGCAAAACAGCCTCACTTCGTATGAATGCGATATTTGTTACAAAAGATTAAGTACCCGATCAAATTTGACAAAACATCAAAAAGCAATTCATTTCAATCGCAACAGCAGCAGAAGATCGGCGAGTATCCGTTGTGGTGATTGCGACCAGACATTCCAGAATAATGATCTGCTAATGCAGCATCTAGACACGCAGCATAAATTGCCGTGTGACGAATGTGGATGTTCATTTGCTACCACTGATCAATTATACAAACATCGCAGCAGTCATTTGAAGTTATCCATCACGCTTGATCCACAAACGAAGAAGTATAAAAGCAGTCGCAGTAGCAATGATATGCCGAATTTGCTGGATGATATCGATAGAAAATCGTTGCTTGTAGTTTGTCCATTTTGTAAGCGCTTATTTGCCACTCACAGGGGATGTAGAGTGCATCAAGCAAGAATGCATCCAGATGATTTTGAAAGCATTAATACCTCGGTGGACACTTCACGACTCAGCTCTACAAGACTAAGCTCTACAAGAGCATCAAATGGAACGTATAAGACCAACACcaacaataaaacgcgaaataatGTGGCACCACCTAAATTGGACCTTTCGAAATTAAACTTGAGCGCGAATAATGATCTCGATAATCAATACGTTTGCATTACGTGTGGCCAGTTATTTGCCGAGCAGCAAGCAATGCAAGCACATATCGCTTCAACCCACGGAAAAGTGACATCGAGAAATTGCGTTACATGCAATATGTTTTTCACGAACGAAGATCAGTATAGGGAGCATGCAAAGACGCATGAAGAACAAGACACTATTGAACCGCCCGCTAAGAAAAAAGCGACGGAGCCGTGTAAAATGTGTAAGATGGTATTCACTGACGAAGATTCACTGGGTGAACATTTTGAAGAAGTGCATAATCTACCTTATATTAAAAAAGGTTGTCTGGTTTGTCCATATTGTGGGAATTCATTTCTTACGTTGGCTGCAATTTCTTCGCATTTGCGCATGCATCGACGCAAAGAGCACACGTGGCAAAGAAGTTATGTTAGTAAAAACACCCCGGTTCAAAGCGGTCCCCAAATTAATTGCGAGATTTGTGGTTGTTGTTTCAATTCGCGCAGTGAAATGAGAAGCCATCTAGTTGAAAAACACCCATTCTAA
- Protein Sequence
- MASSASLNFRSCCRLCLSEADSVTSMFQVNNETNDIVNKISALTNIMVTPEDKITTSICDKCSTLINNFESFKNTCVVNQNVLKKCLQSFEVSLMNDSICIKDEPIEDDVVFIPDDDVVVKAENENPLTVTFDEDANDLPPILSPIVPTAELLAHLNSIEPAVPTEEVMETEHNDDTRLEETSSLVDNNNQQDKLEFAAGLQLQSRMDTINIESMTSAELEYAKKMAIFYSIKMTKRCCCHNTLFNTEKSLMHHFKCRTHYILFPLFTCQHCFTSCNTNVQFGKHRSACTMRNGVVNEFENIYQVANKFERGINKHRSYQMFVCMLCERAYRIFELYCQHVEEHLTEYSQRTVCLCKRKFDNTNIYKQHLFSSCILKQGCDICVENFDTVHEFKRHCLEKHDKNDGLSYPVHEDFQIFDIPFEPQYACVECNMKCLKEQFLISHLKSSHTYDEENAIRVASDCFVGRTDSEDASLAVTSTAPESDALLPDLVMSVPTQNSLTSYECDICYKRLSTRSNLTKHQKAIHFNRNSSRRSASIRCGDCDQTFQNNDLLMQHLDTQHKLPCDECGCSFATTDQLYKHRSSHLKLSITLDPQTKKYKSSRSSNDMPNLLDDIDRKSLLVVCPFCKRLFATHRGCRVHQARMHPDDFESINTSVDTSRLSSTRLSSTRASNGTYKTNTNNKTRNNVAPPKLDLSKLNLSANNDLDNQYVCITCGQLFAEQQAMQAHIASTHGKVTSRNCVTCNMFFTNEDQYREHAKTHEEQDTIEPPAKKKATEPCKMCKMVFTDEDSLGEHFEEVHNLPYIKKGCLVCPYCGNSFLTLAAISSHLRMHRRKEHTWQRSYVSKNTPVQSGPQINCEICGCCFNSRSEMRSHLVEKHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00049492;
- 90% Identity
- -
- 80% Identity
- -