Anig007673.1
Basic Information
- Insect
- Anaulacaspis nigra
- Gene Symbol
- -
- Assembly
- GCA_030264675.1
- Location
- JARJDV010006491.1:27818-31372[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0028 0.27 11.7 0.0 2 23 107 129 106 129 0.96 2 11 0.0075 0.71 10.3 4.6 2 23 206 228 206 228 0.91 3 11 4.5 4.2e+02 1.6 7.6 3 23 433 454 432 454 0.95 4 11 0.3 28 5.3 0.2 2 22 507 527 506 529 0.86 5 11 0.00019 0.017 15.4 1.7 3 23 603 624 602 624 0.96 6 11 0.00017 0.016 15.5 0.1 2 23 650 672 649 672 0.92 7 11 0.0058 0.55 10.7 3.6 2 23 721 743 720 743 0.96 8 11 0.062 5.8 7.5 3.7 2 23 757 779 756 779 0.92 9 11 0.0022 0.21 12.0 0.7 2 23 835 857 835 857 0.95 10 11 0.028 2.7 8.5 0.3 1 23 926 948 926 948 0.98 11 11 0.00064 0.06 13.7 1.1 2 23 984 1006 983 1006 0.93
Sequence Information
- Coding Sequence
- ATGATGACATCAGTCACGTTGCCCTCCAGTTCTGCTCCCATACACAGCGGCTTCCCATCCGCAAACGTAGGCGGCgaaccgccaccgccaacaaCAGCACAATCACAGccggcgtcggcggcgacggatGGCGAGCACGAGTTCGAAGCGCCGCGGCCGGTGAAGCGCAgcctgccgccgtcgtcgccgcaaTCACCTGCCGCCTTGTCGACGACCGCCACGTACGATGCGTCGTGCAAGAAGCGGCGCAAGCAGTCGACGCCTGTGCGAATCTCGGCCGCCGAATCGCCACCCGCCCCGTCCCCCGAGCTGGAGCTCAGCTGCCCCATCTGCCAGCTGGCGTTCGGCGCACCCGACCAGCTCGCCGCCCATCTCGCCACCGAGCACGTGAGTGCCGCCGCGCTTAAGACCGAGCCCGAAGAGGCGCCCGCCGCCGGCAAGCAGCCGGACCTGCCGTGGCTGCCCGAGATGCCAAACAAGGAGTGGATGAATCCATCGAATCTGCTACCCTTTCCTGGCCCCAACCACATGTTCATGGGTctgccggcggcggcgtacGCGCCGCAAGAGACGATGCCACCTCGCCAACCCATTCGCATATTCAATCCGGACGCGTACTGCGAACTATGCAACAAAGAATTCTGCAACAAGTATTTCCTCAAGACGCATAAGGCGAACAAGCACGGCATCTACACGGATCCGCCGCCCACGTCCGACGCACCGGTCGGCATGGGACCGTCAGTGAGTATTCCTTCGTTCGGAAATAAACTGGCGCCGAGTACGTTGCCCATGGATCTCGGCGCCGTCAAAATCGAGCCGAAAAGTTATCCGGAAATGTTTAGTTCCTTCGCAAATAAACTCTTTAACAAAGCGGTCATGGGTAAAACCCCGTCAAACACCTCGTTTTTTGAGGGAGACCCTCAGGAGAATTCATCCACGAATGGCGCCGTGCATAACACTAACGAAAATGGCGGTTCCGATGAACCACAACCgcaccaccaacaacaacaacaaatacagCAACCTGTTATTGCTGACGAGTCGTCCAATTCGCGCATCAACCTTACCGAAACTACCTCAATTACGCTAAAACAGGAACTCGTACAGGACTATCAACAGCCACCACAACAACCAGTGATACCTCAGTCTCAGCCGCAGTTGCCTGGGCAACCAGCAGAACTCTTTTATACCTCGCCAAGCAAATTATCGCCCGGTCAACAGCGCGAACAACAGCAGCGCGAACTTGATTTGTCCATACGCTATCGCCGCATTGGCGTCATGAACCCGAAAGCATTCTGCGAAATTTGTTGCAAAGAGTACTGCAACAAGTACTTTCTGCGCACGCATAAGATGAAGCGGCACGGGATTTATATTCCCGACGACCGCGACAAGGATAACGTCAAGATGGAAATGATGGGCGGATCGATGCAGTATCCGCAAACCAGCCCGTTGAACCTCATCATGAACGAGCAGTCTTCGAATAGCTCCGACCGCAAGACTTCCTCGCCGTCGGATGTCAGCTGCGAGTCCTGCGGgattaaattccaaaatatgAGCTTGTATCAGTTGCACAATGTTAGCGTGCATGCCAAACTGCCAACCACAATGCACGAACAGGCCGCATCGCATCTACAAACCAACACCACGCTGTCGTCGAGCACCTCGCATACCCCCGACGATAAGAAGGAATACACTGATAAATCGCAAACGCAAAATCCCGCCGATAGCATAAGCGAGGActtgcaaaaattacaaactaTGATTTTACAACTTAACGATTTGGAGTCGAATAAAACACCCAATTCCTGCGGGACGTGCAACAAGGAGTTTGAGAATCGTTATTTCCTGCATGCGCATATGATGACCGAACACGGTATCCTGCTCGATGAGAATCAAGATCAGGAGAAGGCGCAGGATGCCGACgatgcaaatattaacaacaatacaaTGTGCGATTTGTGCGGGAAAGATTTCCCGAATAGCGAAGACATGAAGAAGCACATTTACGAAGCACATAAACCAAACACTCAGTCGCAACCGGCATCGATTGAGGACAAAGCCGAATTCAATGGTTTTCCGCCACCGGAAAAATTACCACGCAATCCCAACTTTGCACAGCCCGACCGCAAAACGTCGATGAGCATGACGCCGACGAGCAGCTATTGCGAGATATGCAACAAGGAATTGTGTAATAAGTATTTCATGAAGACGCACATGCAGCGAATGCATGGCATTGAAATCGAAAATGGCGCTCAGATTGGCGGTGTCGTGTGTGATATATGCAACAAGGAGTTGTGCAGCAAGTATTTTCTGCGCGTGCATAAGCATAACACGCACGGCATCGTCGAATACGGATCGAATTTATTGCAGCCGCGAAAGTTTGAGGAACAATCGCCAACCACGTCGGGCACTGCAACGCCGCAGACGAGTGAAGATTCCGCGCTGAAACCATCCGGCGATTTGGCCGACTTAAGTCATCGATATTTTACGCACTTTACCGAAGTCTGCATGCTGTGCAGTCGACGATTCCGCAGCACAAAGTGGCTGAAAGCACATCTTCTCAGCGATCACGGACAAGTGGGTGCCGAAAAGTGGGCCGAACTcgaacaacaactacaactaTCGATGGTTCAGAATAAGGGCTCGTCGGGCAAATCACCGAATCTTTCAATTAAAGTCCCAATCAATTCGGGGGATATGCAACAGCAACAGAAACTTGGTATACAAAATGTCCTTTCGTCCATTTTCGGCGCAGACGAAGCAATGGCCAAGACCTATCAGTGTTCGTATTGCCCCTTCACCACACCCGTCTTGCCGTTTTTGTTCGTACATGAGAGATCTCATGTCCTCATGTCGGAGAATAGCAGTGGTAACAATTCTGGCAATGGTCCTTCGGGTACACCAACACCCACGAATGCACCGAACGCCAATCTGGAGGGTATTCCACTCAAGTGTCCGGTGTGCATGCAGACGTTTACGCAGCCAGAGCAATTACAACATCACGTCTTTAGTCAGCATCCCTTCCTTCCACTGCCACCATTCTTCAACGGTTTCAATGGCCTACCATCCAGCGAGTCGCCCGGCGAAGGATCCAAGGAGCCGTCGGAGAGTGCGGACGACGCCGAGGATGTGGATAAAGGTAGCATGGCGACAACACCGACCACGTCGAAAACGAGTAAGAAAGTAGTAGTTAGTAAACGCAAACCTATCGCGAATCGCATTGATATGATGCCGCAAGACATGGATGAGACGCTGAAAGATATGGCGCGCAAGTCGCAATTGCCCGCCACGTACGCTCTGCCGCAAGTAGCAGCAGCTGcagccgccgtcgccaccgccaacgACGAAGACTCGACGAGCGAAGCGAATCCGACGCAGCCGTACGTAATGCAGGCGTTCCTCCTCGAGGAGCAACTCGGCGCGACGGGCGAAACATCTTCAGCGCCATCCTCGCccacggaggcggcaaaattCATGCCATCTATAGTGTTCCTGCCGGTCGTTCACAAACTTTCCGCGCCGCTAACAGCGACATTCACTCTCACCCCGGCCTAA
- Protein Sequence
- MMTSVTLPSSSAPIHSGFPSANVGGEPPPPTTAQSQPASAATDGEHEFEAPRPVKRSLPPSSPQSPAALSTTATYDASCKKRRKQSTPVRISAAESPPAPSPELELSCPICQLAFGAPDQLAAHLATEHVSAAALKTEPEEAPAAGKQPDLPWLPEMPNKEWMNPSNLLPFPGPNHMFMGLPAAAYAPQETMPPRQPIRIFNPDAYCELCNKEFCNKYFLKTHKANKHGIYTDPPPTSDAPVGMGPSVSIPSFGNKLAPSTLPMDLGAVKIEPKSYPEMFSSFANKLFNKAVMGKTPSNTSFFEGDPQENSSTNGAVHNTNENGGSDEPQPHHQQQQQIQQPVIADESSNSRINLTETTSITLKQELVQDYQQPPQQPVIPQSQPQLPGQPAELFYTSPSKLSPGQQREQQQRELDLSIRYRRIGVMNPKAFCEICCKEYCNKYFLRTHKMKRHGIYIPDDRDKDNVKMEMMGGSMQYPQTSPLNLIMNEQSSNSSDRKTSSPSDVSCESCGIKFQNMSLYQLHNVSVHAKLPTTMHEQAASHLQTNTTLSSSTSHTPDDKKEYTDKSQTQNPADSISEDLQKLQTMILQLNDLESNKTPNSCGTCNKEFENRYFLHAHMMTEHGILLDENQDQEKAQDADDANINNNTMCDLCGKDFPNSEDMKKHIYEAHKPNTQSQPASIEDKAEFNGFPPPEKLPRNPNFAQPDRKTSMSMTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVVCDICNKELCSKYFLRVHKHNTHGIVEYGSNLLQPRKFEEQSPTTSGTATPQTSEDSALKPSGDLADLSHRYFTHFTEVCMLCSRRFRSTKWLKAHLLSDHGQVGAEKWAELEQQLQLSMVQNKGSSGKSPNLSIKVPINSGDMQQQQKLGIQNVLSSIFGADEAMAKTYQCSYCPFTTPVLPFLFVHERSHVLMSENSSGNNSGNGPSGTPTPTNAPNANLEGIPLKCPVCMQTFTQPEQLQHHVFSQHPFLPLPPFFNGFNGLPSSESPGEGSKEPSESADDAEDVDKGSMATTPTTSKTSKKVVVSKRKPIANRIDMMPQDMDETLKDMARKSQLPATYALPQVAAAAAAVATANDEDSTSEANPTQPYVMQAFLLEEQLGATGETSSAPSSPTEAAKFMPSIVFLPVVHKLSAPLTATFTLTPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00049478;
- 90% Identity
- iTF_00049478;
- 80% Identity
- -