Anig005518.1
Basic Information
- Insect
- Anaulacaspis nigra
- Gene Symbol
- -
- Assembly
- GCA_030264675.1
- Location
- JARJDV010004373.1:67822-69693[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.008 0.75 10.3 0.5 1 20 125 144 125 145 0.96 2 12 2.5 2.3e+02 2.4 2.2 2 23 154 175 153 175 0.89 3 12 2e-05 0.0019 18.5 4.5 2 23 182 203 179 203 0.91 4 12 0.00016 0.015 15.6 1.1 1 23 301 324 301 324 0.98 5 12 0.00037 0.034 14.5 0.1 3 21 333 351 331 352 0.93 6 12 0.00014 0.013 15.8 1.2 2 20 376 394 376 397 0.93 7 12 0.079 7.4 7.1 2.1 1 23 402 425 402 425 0.96 8 12 0.0022 0.21 12.0 4.1 1 23 431 454 431 454 0.94 9 12 9.3e-05 0.0087 16.4 3.7 1 23 463 485 463 485 0.98 10 12 0.00044 0.041 14.2 0.8 3 23 493 513 491 513 0.97 11 12 4.5e-05 0.0042 17.3 0.2 1 23 519 542 519 542 0.95 12 12 0.001 0.097 13.1 0.9 1 23 552 574 552 574 0.95
Sequence Information
- Coding Sequence
- ATGGAGAGTCCTGAGATCATTGTTGTGCAGCCTTCCATCATAGAAGAtgatacatttaataatattatgactACAGTATATATAAATTCAGATCCAATGCCTGAAAAAAATTTTGGAGATAATCAGGCACTATTAGAAAATGTATCATCTGAATTGGAAGATTCAGACTCAGGTAAAATAGATATCAAGCTTGAAGATATTGATATTGGGCCAGAAGTAATACTAACACCAGGTTTTGATACAGCAATGAATGATGAATGTGTTGCAGTGGAGGCATTAAGACAGTTGAGCAACTACTCAGAGGAACAACTCAAGAATGATATTCATCCTGATCTTAATGATgctgaaatgaatgaaagagcagaaaaaaattattcatgccAGATATGTAATTCTGCTTTCAGTTTTAAAAaggaatatttaaatcatctAGTTTGTCATTCAATAAGTCGCCCACATTCATGTATTAATTGTGGGAGTTTGTTCCACCTGAAGAAGGATTTAATTGAACATATGACAGTTCATGCAAAAATACATACTTGCTCATGTGGCATATGCAACCAAACATTTACAAGGACATCTTCCttgataaatcatttgaaaatgCACAGTTATACACCAGGAAGAGCaataaaacaggaaaaaaTAAGTGATACTGCAGAATTGGAAGGAATTTTAACTGGCAATAGTACAAATATGCAAACTATGATTGTGAAAACTGAGCCAGATATTAtaccaattaaaattgaaccaGATATTATGCATGTTAGAAATAAATCGGaaactaaatcaattaaaaccaAGACAGATATTAcaccaattaaaaatattgaatcaaaCAATTCTACTAAATTATCTAAACTTTCTGATCAACATGGAGTGAGATTAAAAGAAGGGAAATACCAATGTAACCATTGTTCTGCATTGTTTCGACGAGAAACAGCACTTGCTAGTCATATAAAAGTTAAGCACAATAAAAGTGATGGTGAGCACTTATGTTTAGATTGTGATATTGGTTTTTCTACTGCCACAGACTTAGAAAAACACTTGAAAGCTTGTTCCAAACATAAGCGATCATTGAAAACTTCTTCTTTGGAATACGAAGAAAGTTTTGATAAGACTAGGCAATGTAAGAAATGTGATAAACGATTTGCAACTAAACAGAAACTTATGCAACATGTGTGGGTACATCGGAAACAAACGCACAATTGCGATGAGTGTGCGTCAAATTTCGATACCATTAAAGCTCTCAATCATCATCGACTAACTGATCATAAACTAGAAGAGCAACATGCGTGTGAGGAATGTGGCAAGATTTACTGTACACACCAagGATTAACAGAGCATAGAACTAAAGTACATCAAAAAGGAAGTGGTATAGGCAGTTATTCTTGTGAAGTGTGTAGCAAAACTTTTAGCAGTCGACAGggttttcatattcataaacgaATGCATTCTGGGGAACGTCCATACGGTTGCAAATATTGTATGAAAAGTTTTCGTGATGGTGGTACGCTTCGAAAACACGAACGTATCCACACAGGAGAACGACCCCATGTTTGTGCAGTATGTCAAAAAGGATTCACTCAAAAAGTTGGTTTACGTGAACACGTACGATGGGTACATGCAGCGACACCAGATGCAAATGGATTATTTAGTTGCTCAATCTGCCAGAACAATTATACTAACCGAGACGAATTAACGGTTCATTTTATATATCATAGCGATAAAATATCACGTGCGTCTAAAGATTAA
- Protein Sequence
- MESPEIIVVQPSIIEDDTFNNIMTTVYINSDPMPEKNFGDNQALLENVSSELEDSDSGKIDIKLEDIDIGPEVILTPGFDTAMNDECVAVEALRQLSNYSEEQLKNDIHPDLNDAEMNERAEKNYSCQICNSAFSFKKEYLNHLVCHSISRPHSCINCGSLFHLKKDLIEHMTVHAKIHTCSCGICNQTFTRTSSLINHLKMHSYTPGRAIKQEKISDTAELEGILTGNSTNMQTMIVKTEPDIIPIKIEPDIMHVRNKSETKSIKTKTDITPIKNIESNNSTKLSKLSDQHGVRLKEGKYQCNHCSALFRRETALASHIKVKHNKSDGEHLCLDCDIGFSTATDLEKHLKACSKHKRSLKTSSLEYEESFDKTRQCKKCDKRFATKQKLMQHVWVHRKQTHNCDECASNFDTIKALNHHRLTDHKLEEQHACEECGKIYCTHQGLTEHRTKVHQKGSGIGSYSCEVCSKTFSSRQGFHIHKRMHSGERPYGCKYCMKSFRDGGTLRKHERIHTGERPHVCAVCQKGFTQKVGLREHVRWVHAATPDANGLFSCSICQNNYTNRDELTVHFIYHSDKISRASKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -