Anig013211.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Anaulacaspis nigra
Gene Symbol
-
Assembly
GCA_030264675.1
Location
JARJDV010011021.1:4384-8702[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.002 0.18 12.2 2.2 1 23 550 572 550 572 0.98
2 11 1.9e-05 0.0018 18.5 0.2 1 23 578 600 578 600 0.95
3 11 1.2e-05 0.0011 19.2 0.9 1 23 641 663 641 663 0.98
4 11 3.5e-06 0.00032 20.9 1.0 2 23 670 691 669 691 0.95
5 11 2.7e-08 2.5e-06 27.5 3.8 1 23 697 719 697 719 0.99
6 11 9.2e-07 8.6e-05 22.7 0.3 1 23 725 747 725 747 0.98
7 11 2e-06 0.00019 21.6 2.0 1 23 753 775 753 775 0.98
8 11 0.00057 0.054 13.9 6.3 1 23 781 803 781 803 0.98
9 11 1.4e-05 0.0013 18.9 1.1 1 23 809 831 809 831 0.99
10 11 0.0069 0.64 10.5 0.4 1 23 837 859 837 859 0.98
11 11 0.0013 0.12 12.7 1.7 5 23 869 888 865 888 0.92

Sequence Information

Coding Sequence
ATGGAACGTGATAAGATGAAGCAAATGGATAGAACGCACAGACATGATCCCTCTGAAGACGCTGAAAGGAAGAAACGTCTACGAGAAAACGCCTTGGAGATTCTCAAATCGACCGCTtgccaaaatgaaattaaacctATTAATGTCTACAATGATGATAGCAATGAAGAGGATATAAATACGGATGAGGAAAGCAACAATAAGCCAATACCACCGCCCGCACCGCAAATTACACAACAAGCGAGTGTCCCACTCACCCACGAGGaaatgATGCTAAATGTTCGCCGAACAATGACTGAAATATTGTTAAAGGTAACGAATCGTGAAATTGCACAAATCTGTAAAGAGGAACATCAACGTCACTTGAGGAGAAAAGCCACTGATCAGCACGTAACAGCACCCAGCGCAGGTGCGAACCTTAGTGCCAGGCTTGGATTGGGTGCCTACGAGGGTTCCGATGACAGCAGCAATGAGAGTGACGACGCGGATGGTACAAAAAATGAGCAAGATTCAGATAACGATTTAATGGACGTGATCAAACGTCGGAAAGAAGAATTTGCGAAGACAGAAAAGGAAATCGAAAGTCGATTAAAAGAGGCtgaagtaaataattcaaaaactagAGAATCGTCAGATAGAGATTCCTCGCCGGGTGATCTTCAAGTGATCGTCGATCACCTCGTCGAAGTGGGCGCCATCGATCGCGCTCTTCATCTCGTTCTGAGGATTACAATAGATCTCGAAGTTCGAAAAGAATTCCGTCTTCTTCTCGTTCAAGTCATAGACGCTCAAGATCAAGATCGAGATCTCGTCGTGCATCGAAAAGGCGCAGTCGATATTCGCCAGTGCACTCAAAATCACCTCGATCAAATTCATATCGGCGTCGACGAAGATCAAAGTCGCGCAGTCCACGTTATTCCTCTCGACGTCGATCCAACTCTAGTCGTCGACGAAGTCGCAGTTTCCATTCTCGTTCAAGATCCAGATCCATTGATAGTAGGGgTGCCCCGTGTACCTGAATACTGCAGCCATGACCTGAGCAagaGAGAGAGAACAACAATTCCCGAGATTATTCACATAGATAAAGTGTGCAGAATATGTTTAAGTGAAAAAACTACAATGAAGCCACTATTTGGAGCTTATCTTCCAAATATGCTAATGACTATTGCATCAATTCAGATAATTGAAGGCGATGGAATGCCACAACAAGTATGTGGTCAGTGCTTGCAGCAGATAAATCGGTTTTACAGTTTCAAAAGACAATGTGAAAAATCTGATTTAACACTAAGACAATATCTAGATGAATTAAGTCAAGTAAACAGCAATCTACAAACATCACAAgcatcaaatattaatcagcATATAACTGCAGCAAGTCAGCCATCAACTTACAATACATCTGACATGATGCAATCTTCATTTATTAGTGATATATTTAATCTGAATGAGACTGATTCACAATCCTATGAGTATAATACATTTAACAATACTTCTAACATTGATGCATTGGATGATACAATGCAAAGTTTGCAGACTATTGCCGAGCAATGTCTTCCACCAACTTGGCAATCTTCCTGGCAGGAAAACTGGCAAGAACCTTCAAATAATCTTGCTAATTTATGTGATGACTTTAGTTTAGATGAGTTCTTTAAATGTCAATTTTGCAATCATACATTCAAAGATGATTGGTCCCTGGGGGAGCATCTCAAAATTCATACAAACAGTCCTATGTTCTTCTGCAATATTTGCGGAAAAAATTTCGCCAGTCGAGGAGCACTCTCAGAGCATATTACTGAGCATTCAATGATGATTCAACcaaattatatgaattcaCAGCCTCAGCAGCTACcacaatgcaatatgcaacAGGAGGGAATTGCTCCTCCTGTAGATCCaattaacaatgaaaattataaaaaattcgAATGCCGTATATGTGGGAAAACTTATACACAAAGTCGAAtattaacaattcatttaCGGACGCACACGGGAGAACGTCCTTTAAGTTGTGAGACTTGTGGGAAAACTTTTGGCCATCCAAGTTCCTTGCAGAAACACAAGGCGGTGCACTTGGCGtacaagaaatttaaatgctcCATGTGCAATCGGCGATTTCGTCAGAAAAGTAATCTAAATGTACATATGAAGACTCATACTGGAGAGAAACCGCACGTCTGTAGTATTTGCGGCAAAGGGTTTATCACGACTGTTAATTTAGATGCTCATATGCGAAGTCATACCAAATTGAAACCATTTCGGTGCTCGGAATGTAAAGCAGCTTTTACGAcATCCAGTCAACTGAAGAAGCATACTTTAAGACATACAGGAGAAATGCCTTATCGATGCTGGCATTGTGGCAAATCCTTTCGGCATAAAGAAACTCGAGATACACACGTTCGTTATCATACTGGAAATCGTCCCTACGAATGTTCTCTTTGCCCTAAAAAGTATATTGCTGCGTCACATTTACGAATGCACATGAAAAGCCATAAAGACGAGCGAGATTTTCAATGTCACGTTTGCGAAGCAAAATTCTTAGATACAGCTACGTTAAAAGCACACGTTGCGACGCATACAGGCATTCGaagtttaaattgcataatgtGCCACTTAAATTTCAGCCAACAGGTTGATTTGAATAATCACATGAAAAGTACACATGGtttataa
Protein Sequence
MERDKMKQMDRTHRHDPSEDAERKKRLRENALEILKSTACQNEIKPINVYNDDSNEEDINTDEESNNKPIPPPAPQITQQASVPLTHEEMMLNVRRTMTEILLKVTNREIAQICKEEHQRHLRRKATDQHVTAPSAGANLSARLGLGAYEGSDDSSNESDDADGTKNEQDSDNDLMDVIKRRKEEFAKTEKEIESRLKEAEVNNSKTRESSDRDSSPGDLQVIVDHLVEVGAIDRALHLVLRITIDLEVRKEFRLLLVQVIDAQDQDRDLVVHRKGAVDIRQCTQNHLDQIHIGVDEDQSRAVHVIPLDVDPTLVVDEVAVSILVQDPDPLIVGVPRVPEYCSHDLSKRERTTIPEIIHIDKVCRICLSEKTTMKPLFGAYLPNMLMTIASIQIIEGDGMPQQVCGQCLQQINRFYSFKRQCEKSDLTLRQYLDELSQVNSNLQTSQASNINQHITAASQPSTYNTSDMMQSSFISDIFNLNETDSQSYEYNTFNNTSNIDALDDTMQSLQTIAEQCLPPTWQSSWQENWQEPSNNLANLCDDFSLDEFFKCQFCNHTFKDDWSLGEHLKIHTNSPMFFCNICGKNFASRGALSEHITEHSMMIQPNYMNSQPQQLPQCNMQQEGIAPPVDPINNENYKKFECRICGKTYTQSRILTIHLRTHTGERPLSCETCGKTFGHPSSLQKHKAVHLAYKKFKCSMCNRRFRQKSNLNVHMKTHTGEKPHVCSICGKGFITTVNLDAHMRSHTKLKPFRCSECKAAFTTSSQLKKHTLRHTGEMPYRCWHCGKSFRHKETRDTHVRYHTGNRPYECSLCPKKYIAASHLRMHMKSHKDERDFQCHVCEAKFLDTATLKAHVATHTGIRSLNCIMCHLNFSQQVDLNNHMKSTHGL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-