Aobl012750.2
Basic Information
- Insect
- Anastrepha obliqua
- Gene Symbol
- -
- Assembly
- GCA_027943255.1
- Location
- JAPTHQ010000197.1:838626-846687[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.072 10 8.2 2.3 2 23 247 269 246 269 0.93 2 14 1.2 1.7e+02 4.3 0.0 6 23 278 295 278 295 0.98 3 14 6.1e-05 0.0085 17.8 2.8 1 23 301 324 301 324 0.96 4 14 9.6e-05 0.013 17.2 1.4 2 23 362 384 361 384 0.93 5 14 0.48 67 5.6 0.1 3 17 392 406 391 407 0.90 6 14 0.061 8.5 8.4 3.6 2 23 609 630 608 631 0.93 7 14 0.0019 0.26 13.1 4.2 1 23 663 686 663 686 0.96 8 14 0.16 22 7.1 5.1 1 23 693 715 693 715 0.91 9 14 9.6e-05 0.013 17.2 1.4 2 23 724 746 723 746 0.93 10 14 0.003 0.42 12.5 0.1 3 23 754 774 753 774 0.96 11 14 0.00011 0.015 17.0 0.8 2 23 783 805 782 805 0.97 12 14 0.13 18 7.3 0.2 5 20 814 829 812 836 0.81 13 14 1.3e-05 0.0018 19.9 1.8 1 23 842 864 842 864 0.97 14 14 0.0039 0.55 12.1 5.0 2 23 871 893 870 893 0.95
Sequence Information
- Coding Sequence
- ATGTTTTATGAGCAATCGTGCTTACTGTGCTTGGAAAAAACCAGCGCAACCGATGGTCGAATAAATATTGATTCTGAAGATCCGCAATCAGTAAAGATTCGTGAAGCAATTAAACAACATTTTAGAGAAGAGCTCAGTATGATACCCTTTTTAACAACCAAAATAGTGTGCAACCAATGTTGGGAATTGGTACAATCTTTTGATGAATTTTATGTTCGTGTACAAAAAGCACACTTAGCAACGAGCGACAAACTTAAATCTTTGCAAGAGTTGGAGATAGATGTAAAAGAAATTAAAATAGAGACGGACACATTAGACGAGTTAACTTCTCTTCCAAAACATAAAAATAAACACTCACGCGGTCTCGAAAATGTTGAGGAAAATATGGAGAAGGAACTAATTTCCTTACAAGGAAACGAAGATAAGAATAAACAGTTGCGTAATGTAAATGTAGAAAGTTTTGCTATTAAGAGTGAAGCTATGCAAGATGATACACTGGATGCAAATTATTCCCCGCAAATATCAGAAGATGAGAGTGAATCAAGTAGCTCAGTGTCAGAAAGTGTTGTGAAGCTAGAAGAGGAAGAGATATTGGACCGTGCACCGCATAAAATATTGCGAACTAAAGGAAGATCAAAACAAAAGCGAACCCAGCAAAAGAGAGAAGCAAAGCAACAGAATGAAAGGCGACATAAAACCAAAGACTATGATGAATTTATTGCACAAAATTTTAAATTAAACTGTTTTTTTTGTCAAAAGTCTCTAACAGATTTCAAGGAACTAAAAAGTCATTTTCGGGAAAACCACCAAACCAACGGATATGTAAAATGTTGTGGCAAGAAATTATTTGACCGAGGTGTGCTCGTTGATCATATTCGTGTTCACATCAACCCAGAATACTTCAAATGTCAACACTGCGACAAGGTATTAAGTGATCGAAGTGGTCTGAAAATGCATTTGCAGTATTTCCATGGTTCCAGAGAACGTACTTATCATTGCATTATTTGTTCTAAAGGCTTTTTGAGCCGAAAAGTTCTCACTCGACATTGTCTAATCCATGCTCCCGACGAACAAAAAAATGTTAAGTGCGAACAATGTGATAAAGCATTCTGTAATCAATATAGCATGAAACAACACTTAGCGCTAGTTCATCTAAATTTATATGCGAAGATATGTGATATTTGCGGCAAAGCACTCAAATCGACAAAAAGCTTACGACTCAGTATGATACCCTTTTTAACAACCAAAATAGTGTGCAACCAATGTTGGGAATTGGTACAATCATTTGATGAATTTTATGTTCGTGTACAAAAGGCACACTTAGCAGCGAGCGAAAAACTTAAATCTTTGCAAGAGTTGGAGATAGATGTAAAAGAAATTAAAGTTGAAACGAACACATTAGAGGAGTTTATTTCTCTTCCAAAACGTAAAAATAAACACTCACGCGGTCTCGAAAATGTTGAGGAAAATATGGAAAACGAATCAACATCCTTACAGGGAAACGGAGATAAGAATGAACAGTTGCATAATGTAGATGTAGAAAGTTTTGCTATTAAGAGTGAAGCTATACAAGATGATACACTGGATGCAAATTATTCCCCGCAAATATCAGAAGATGATAGTGAATCACGGAGCTCAATAGCAAAAGACGTTATAAAGCATGAAGAAGAGAAGGCATTGCACGGTGCACCACATAAAATATTGCGAACTAAAGGAAGGCCAAAACAAAAGCGAACCCAGCAAAAGAGAGAAGCAAAGCAGCAGAATGAAAGGCGACATAAAACCAAAGACTATGACGATTTTATTGCACAAAATTTTAAATTAAACTGTTTTCTTTGTCAAAAGTCTCTAACAGATTTCAAGGAACTAAAAAGTCATTTTCGGGAACATCACCAAACCAACGGATATGTAAAATGTTGTGGCAAGAAATTACTTAACCGAGGTGTGCTCGTTGATCATATTCATGTTCACATCAACCCAAAATACTTCAAATGTCAACACTGCGAGAAGGTATTATGTGATCGAAGTGGTCTGGAAATGCATTTGCAGTATTTCCATGGTTCCAGAGAACGTACTTATCATTGCACCATTTGTTCTAAAGGCTTTTTCAGCCGAAAAGTTCTCACTCGACATTGTCTAATCCATGCTCCCGACGAACAAAAAAATGTTAAGTGCGAACAATGTGATAAAGCATTCTGTAATCAATATAGCATGAAACAACACTTAGCGCTAGTTCATCTAAATTTATATGCGAAGATATGTGATATTTGCGGCAAAGCTTTAAACGGAAATGAAGCATTTCGACGGCACCAGGAGGAACATGCTGGTATACCCGCCACCTCTGTGAAGTGTAATTTATGTAATACAGAACTTAAGACAAAATACGGATTGGCGCGACATATGAAAACAATGCACACCGAGGAGTACCAAACTCCACAAGTCTGCCCAATTTGTTTCAAAGTATCTCCAAATCTACGAGCACATAGAAGTCATATGGAATATTTGCACGTCGCAGAAAAAAAACATGTTTGCAAGCTTTGTGACAAAGCATTCAAATTGCCAAAAAGCCTTCGAGAACATATGACAACACATACAGGAGAAGTTTTGTGTACTTGCACATTTTGCCCCCAAACCTTCAATTCTGCATCGAACATGTACACTCATCGTAAACGAAAGCATCCAAAAGAATGGGCAGAAAAATGTGCAAATAAAAGAATCTACTCTGGAATAGTACAAAATATTCAAAAAGATTTGGAATCCACGATATAA
- Protein Sequence
- MFYEQSCLLCLEKTSATDGRINIDSEDPQSVKIREAIKQHFREELSMIPFLTTKIVCNQCWELVQSFDEFYVRVQKAHLATSDKLKSLQELEIDVKEIKIETDTLDELTSLPKHKNKHSRGLENVEENMEKELISLQGNEDKNKQLRNVNVESFAIKSEAMQDDTLDANYSPQISEDESESSSSVSESVVKLEEEEILDRAPHKILRTKGRSKQKRTQQKREAKQQNERRHKTKDYDEFIAQNFKLNCFFCQKSLTDFKELKSHFRENHQTNGYVKCCGKKLFDRGVLVDHIRVHINPEYFKCQHCDKVLSDRSGLKMHLQYFHGSRERTYHCIICSKGFLSRKVLTRHCLIHAPDEQKNVKCEQCDKAFCNQYSMKQHLALVHLNLYAKICDICGKALKSTKSLRLSMIPFLTTKIVCNQCWELVQSFDEFYVRVQKAHLAASEKLKSLQELEIDVKEIKVETNTLEEFISLPKRKNKHSRGLENVEENMENESTSLQGNGDKNEQLHNVDVESFAIKSEAIQDDTLDANYSPQISEDDSESRSSIAKDVIKHEEEKALHGAPHKILRTKGRPKQKRTQQKREAKQQNERRHKTKDYDDFIAQNFKLNCFLCQKSLTDFKELKSHFREHHQTNGYVKCCGKKLLNRGVLVDHIHVHINPKYFKCQHCEKVLCDRSGLEMHLQYFHGSRERTYHCTICSKGFFSRKVLTRHCLIHAPDEQKNVKCEQCDKAFCNQYSMKQHLALVHLNLYAKICDICGKALNGNEAFRRHQEEHAGIPATSVKCNLCNTELKTKYGLARHMKTMHTEEYQTPQVCPICFKVSPNLRAHRSHMEYLHVAEKKHVCKLCDKAFKLPKSLREHMTTHTGEVLCTCTFCPQTFNSASNMYTHRKRKHPKEWAEKCANKRIYSGIVQNIQKDLESTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -