Basic Information

Insect: Anastrepha obliqua
Gene Symbol: -
Assembly: GCA_027943255.1
Location: JAPTHQ010000100.1:1966322-1974477[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00054 0.076 14.8 1.4 1 23 184 207 184 207 0.91

2 15 0.0078 1.1 11.2 0.0 3 23 213 234 211 234 0.90

3 15 0.53 74 5.4 0.3 2 23 241 262 240 262 0.92

4 15 0.0022 0.31 12.9 0.1 1 23 286 308 286 308 0.98

5 15 0.00014 0.02 16.7 1.5 1 23 310 333 310 333 0.97

6 15 0.031 4.4 9.3 5.7 1 23 354 377 354 377 0.98

7 15 0.0089 1.2 11.0 1.2 1 23 393 416 393 416 0.97

8 15 5.1 7.1e+02 2.3 1.8 2 23 447 467 446 467 0.87

9 15 0.47 66 5.6 0.4 2 23 478 500 477 500 0.93

10 15 0.015 2.2 10.3 0.4 3 23 510 530 509 530 0.94

11 15 0.0018 0.25 13.2 1.3 1 23 536 558 536 558 0.98

12 15 5.5e-07 7.6e-05 24.3 0.6 1 23 563 585 563 585 0.98

13 15 0.0031 0.43 12.5 3.2 1 23 591 613 591 613 0.98

14 15 0.00094 0.13 14.1 2.8 2 23 619 640 619 640 0.95

15 15 0.0023 0.33 12.8 2.1 1 23 645 668 645 668 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00054	0.076	14.8	1.4	1	23	184	207	184	207	0.91
2	15	0.0078	1.1	11.2	0.0	3	23	213	234	211	234	0.90
3	15	0.53	74	5.4	0.3	2	23	241	262	240	262	0.92
4	15	0.0022	0.31	12.9	0.1	1	23	286	308	286	308	0.98
5	15	0.00014	0.02	16.7	1.5	1	23	310	333	310	333	0.97
6	15	0.031	4.4	9.3	5.7	1	23	354	377	354	377	0.98
7	15	0.0089	1.2	11.0	1.2	1	23	393	416	393	416	0.97
8	15	5.1	7.1e+02	2.3	1.8	2	23	447	467	446	467	0.87
9	15	0.47	66	5.6	0.4	2	23	478	500	477	500	0.93
10	15	0.015	2.2	10.3	0.4	3	23	510	530	509	530	0.94
11	15	0.0018	0.25	13.2	1.3	1	23	536	558	536	558	0.98
12	15	5.5e-07	7.6e-05	24.3	0.6	1	23	563	585	563	585	0.98
13	15	0.0031	0.43	12.5	3.2	1	23	591	613	591	613	0.98
14	15	0.00094	0.13	14.1	2.8	2	23	619	640	619	640	0.95
15	15	0.0023	0.33	12.8	2.1	1	23	645	668	645	668	0.97

Sequence Information

Coding Sequence: ATGCAATGCCGCGCCTGTATGCAAATGAAATGTGAAGGAGTTGTGGACATGAGCTGCGCTGTATCAATGGATGGGAAAACTGTGTATGATTACTTCAATGAGTGCACGCAACTCGATGCTAATTCCACCGATAAACTTCCGAATATGTTGTGCACGAATTGCGCAAGAAATCTTCGAATGGCTTATAATTTTAGACAAACAGCTCGCCGTTCAAACGAAGAATTTAAGAAAGTTCTATCTACACAAAGAGAAGAACCAGAATTGATTCTTTCAAGCGATGAGCAAACGCAAGTATTAGATGATGTTGCGGAAAACACAAACGATCCGTTAGCTGTACCAGAACCAAAGGCTTCCGTTATTGACACGGCCATGTCCATAGATATACCTGAGCTAGATATAACCGTAGTAGATATAAAAACAGAGATTTGCGAGCAATTATGTGAAGAATCAAATGAAGACCAAAAAGAAGAAGTTTTGAGAAGTGATTGTGAAGCATCCTCGCAAGATGAATGCGAAAGTGACAACAACGTTTTAAGAAGCAAAGCCGCTCACATTTGTGAATTATGTGATTTTACATATGCAACACAAAAGCAACTGAAAAATCATATTTTTGAGCTACATAAATCCGAAATCATCTGTATGAAATGTCCCAAGGTTTACGAGTTTCCGAGTGAACTACAGCTACATGAATCTCTTGTACATGGAACAGAATCGCCGATGCAGTGCCCATGGTGCAATGAATCTCGAGCCAGAGAAGAATTGGCAAAACATTTGCAAAAGAAGCACAGTAATTCTTACTTAAAATATTTCCCGAGGATGCGTATACGCGGTCGCGGTGTGGATGATATTGCCTCTTTCCGTTGTGAAGATTGTGAACAATACTTCTCGTCTATTCTCGAGTTAGCCGATCACATAAAAGAGCACAAATTTGATTGTCCAATATGTTCTATGAGTTTTAAAAAACATGGTACTTATAGGGCACACGTAAGACGTATACATAATCACTCTATAACAAGTTTGAAAGCTATGATTGGGTGTAATGAAGACTTAAGTAAACCATTTAAATGCTCTATATGTTCAAGACAGTTCAAGTTAAAGAGTTCACATCAGGAGCATATGAAACGTAAACATAATCAAAGTATAGCTCAATATACGAAAAATGATGATTATAAATTATATGAATGTTCCCTCTGTAATATGAGTTTTGGAAGCCCAAATTCTGTATATTACCACAAACGGCGAAAACACGGAAACATATCAACAAGTGCTGTAGATGATGGAAATGATACCAGTTTAGAGAGAGAAAGTAAAGAAGAAACGGAAAACAGCGAATTAGTTAAATGCAAAGTCTGCCATAAGGAAATATCGGCAAATCAAATAAAATATCATGAAAAACGACATGCTTATGCTCTGAATAAGAAAAGAAAATTTCTTTGTGCGTTCTGCCCTCGCGAATATAATTCTGAAACTACTGTGAAATTACATGAAAAAAAGGTTCATTTATGCGAAAAACCCGAACCGAAAGCGTGCCCTATATGTCAGAAAAAAGTTGATCCAAAATATTTAAAGCACCATATTGAAAACGTTCATACTGCTGAGCGCAAGTTTGTCTGTGATGTGTGCGGTGATTCGTTCAAAAGTTACGTACTTCTTCACAGCCATAAACGTTTGCATTTGGAAAGGAATTTTCCATGCACCGTGTGTGAGAAAAAGTTCATACGCTCGTTTGACCTTAAAGTGCACATGCGTATTCACACTGGAGAGGAACCATATGCTTGCCATTTATGTGATCGGCGTTTTAAAATCAAAGTTCGGCTCAATTACCACCTACAACGCCATGCTGGTATCAAGCGGAAATGCAATGTGTGTGGCAAAGAGTTCAATCATGTTAAGCAGCTGAAAATCCATTCATACAAACACACTGGTATGCCCTACAAATGTTCAGTATGTGATTATGGTTGCGCGCAACGCGATGTATTTAGGAAACATTTATTGCGAATGCATGACATGACCATGACGGCTGATGAATATTGCGCGATGTTCAAGGCGAATACTGGGCGAAATCCGCATGTGAAAACTTTAGAAGAGCTACAACTGGAGGCCCAAAATATGGAGCAAGAGGAATATTCAAATTAA
Protein Sequence: MQCRACMQMKCEGVVDMSCAVSMDGKTVYDYFNECTQLDANSTDKLPNMLCTNCARNLRMAYNFRQTARRSNEEFKKVLSTQREEPELILSSDEQTQVLDDVAENTNDPLAVPEPKASVIDTAMSIDIPELDITVVDIKTEICEQLCEESNEDQKEEVLRSDCEASSQDECESDNNVLRSKAAHICELCDFTYATQKQLKNHIFELHKSEIICMKCPKVYEFPSELQLHESLVHGTESPMQCPWCNESRAREELAKHLQKKHSNSYLKYFPRMRIRGRGVDDIASFRCEDCEQYFSSILELADHIKEHKFDCPICSMSFKKHGTYRAHVRRIHNHSITSLKAMIGCNEDLSKPFKCSICSRQFKLKSSHQEHMKRKHNQSIAQYTKNDDYKLYECSLCNMSFGSPNSVYYHKRRKHGNISTSAVDDGNDTSLERESKEETENSELVKCKVCHKEISANQIKYHEKRHAYALNKKRKFLCAFCPREYNSETTVKLHEKKVHLCEKPEPKACPICQKKVDPKYLKHHIENVHTAERKFVCDVCGDSFKSYVLLHSHKRLHLERNFPCTVCEKKFIRSFDLKVHMRIHTGEEPYACHLCDRRFKIKVRLNYHLQRHAGIKRKCNVCGKEFNHVKQLKIHSYKHTGMPYKCSVCDYGCAQRDVFRKHLLRMHDMTMTADEYCAMFKANTGRNPHVKTLEELQLEAQNMEQEEYSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00082369;
90% Identity: iTF_00081559;
80% Identity: -