Basic Information

Insect: Anastrepha obliqua
Gene Symbol: -
Assembly: GCA_027943255.1
Location: JAPTHQ010000157.1:6592861-6608286[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.04 5.6 9.0 0.2 1 23 158 180 158 180 0.97

2 12 2.6e-05 0.0036 19.0 2.0 1 23 186 208 186 208 0.99

3 12 0.0008 0.11 14.3 1.8 1 23 214 236 214 236 0.98

4 12 5.5e-05 0.0077 18.0 0.8 1 23 242 264 242 264 0.98

5 12 8.8e-06 0.0012 20.5 0.8 1 23 270 292 270 292 0.99

6 12 0.21 29 6.7 0.0 1 23 416 438 416 438 0.97

7 12 1.5e-05 0.0021 19.7 2.9 1 23 444 466 444 466 0.99

8 12 0.00012 0.017 16.9 1.3 1 23 472 494 472 494 0.99

9 12 4.2e-05 0.0059 18.3 1.6 1 23 500 522 500 522 0.98

10 12 0.00059 0.083 14.7 2.4 1 23 528 550 528 550 0.98

11 12 7e-06 0.00098 20.8 0.6 3 23 558 578 557 578 0.97

12 12 7.1e-05 0.0099 17.6 0.4 1 23 584 606 584 606 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.04	5.6	9.0	0.2	1	23	158	180	158	180	0.97
2	12	2.6e-05	0.0036	19.0	2.0	1	23	186	208	186	208	0.99
3	12	0.0008	0.11	14.3	1.8	1	23	214	236	214	236	0.98
4	12	5.5e-05	0.0077	18.0	0.8	1	23	242	264	242	264	0.98
5	12	8.8e-06	0.0012	20.5	0.8	1	23	270	292	270	292	0.99
6	12	0.21	29	6.7	0.0	1	23	416	438	416	438	0.97
7	12	1.5e-05	0.0021	19.7	2.9	1	23	444	466	444	466	0.99
8	12	0.00012	0.017	16.9	1.3	1	23	472	494	472	494	0.99
9	12	4.2e-05	0.0059	18.3	1.6	1	23	500	522	500	522	0.98
10	12	0.00059	0.083	14.7	2.4	1	23	528	550	528	550	0.98
11	12	7e-06	0.00098	20.8	0.6	3	23	558	578	557	578	0.97
12	12	7.1e-05	0.0099	17.6	0.4	1	23	584	606	584	606	0.96

Sequence Information

Coding Sequence: ATGTCTGCTTACGTATATTTACAGGACACCAATAATTATGAGGATTCTGATGAGGCTTATATGCAAAAAGATGATGAGATTGATGGTGTCTCAAAAATAGATTCACAGGCAAAATCAAAGTTGAAGACTAAAGAAGTGACAACAACACCAGATATCATTTTAGATGATGCACAATGTAAAATGCTGGCTAAAATGTACAAGACGTACCCTTGCCTTTGGAATGAAGAGGATACTGCGTATAGGTTCAAGAATAGGCGTGAAGAAGCGCTAAAATCCATGCTGGAGAAATTTAATGCCAAATCTGGATTCAGCTTGACACAACTGGATTTGGAAAGTGAAATCACACGACTTCGAAAAACTTGTTCATTCGAAAAGAAACAAAAAATAACATGTAAACGAAACAATTTGCGATATCAACCAACCTGCTCATATTACCTGTACATTGCATACCTCGAGATCGACGTTCCTCCTTTTGAATGCTCCGTATGCCAAAAATTACTAAACCAGATAGGTCAGTACAAAGTGCATTTAGCATCTCATGATGGTTCGTTGCCATTTAAGTGTCACCTCTGCGGTCATGGCTTTCAAGTGGCGGCTAATTTAACCGTCCATTTACGAAGGCATGTTCAAGACTACACCTATAATTGCGAAGTGTGTAATAAGCCATGCGCTACGACAACTGAAAGGAAAGTCCATATGCGTTCACACACAGGCGAAAAACCGTTTGTTTGTTATATTTGTGGTCAGAAGACACGAACGTCATCGTCACTTTTAGTGCACACTATGCGTCACGACAATCAACGTCGTTACAAGTGTAAAATTTGTGCGAAAAGCTTCTTTGAAAGGGGAACATTGAACGTACACATGAAAGTTCACTCAAAAACTAAATTAAAGTCAACAATTCAGAAAGAGACAACCACACCAAATATATTTTTAACTGACTCGGAATGCATAGTTTTGGCTGAACTTTATAAGACGTACACTTGTCTTTGGGATGAAAAGGACATCGCGTATAGGTTTAGGAATAGACGTGAAGAAGCTTTAAAATCTTTACAGGAGGAATTTAATAACAAAACTGCATTACACTTGTCACGACTTGAATTGGAAAGTGTAATTTTACGACTGCGAAAATCGTGTTCTATCGAAAAGAAAGAAAAAATAACATGCAAAAGAAACGAAATACGACATCGGCCAAACTGTTCATATTACGATTACATTGCATTTCTCGAGGTAGATGTTCCCCCCTTTGAGTGTTCAGTATGTGAAAAATTGTTACCTGGTTTAGGTCAGTACAAAGTGCATTTAGCATCTCATGATGGTTCGTTGCCATTTAAATGTCATGTTTGCGGTCATGGCTTTCAGTTGGCATCCAATTTAACAGTACATTTGCGAAGGCACGTACATGACTACACCTACAGATGTGAGGTGTGCAATAAGCCCTGCGCAACAACTACAGAAATAAAAATCCATATGCGTTCGCACACAGGCGAAAAGCCATTTGTTTGTTCCATTTGTGGTCAGAAATCTCGAACATCATCTCACCTTTTGGTACACACATTGCGTCACCAGAAAAGACCTCGACACAAGTGCAAGCTTTGTTCGAAAATGTTCTATGAAACAGGAACGTTGAACGAACACATGAGCGTTCACAGGAATGTGCGAGACAAAATATGCGATGTATGCAACAAAGGTTTTACAAGTAATAAGCAATTGCGCCAACATCAACTTATCCATAGCGCCGAAAAGAAATATTTATGCAAACTTTGCGGAAAGCGGTTTGCGCAATTCGCCGGCCTTAGTGGGCACATGAAGTCGCACGGTACAAAGTTGTCTGCGAATGCCTCCGCAAATACGAATTCAGAATAA
Protein Sequence: MSAYVYLQDTNNYEDSDEAYMQKDDEIDGVSKIDSQAKSKLKTKEVTTTPDIILDDAQCKMLAKMYKTYPCLWNEEDTAYRFKNRREEALKSMLEKFNAKSGFSLTQLDLESEITRLRKTCSFEKKQKITCKRNNLRYQPTCSYYLYIAYLEIDVPPFECSVCQKLLNQIGQYKVHLASHDGSLPFKCHLCGHGFQVAANLTVHLRRHVQDYTYNCEVCNKPCATTTERKVHMRSHTGEKPFVCYICGQKTRTSSSLLVHTMRHDNQRRYKCKICAKSFFERGTLNVHMKVHSKTKLKSTIQKETTTPNIFLTDSECIVLAELYKTYTCLWDEKDIAYRFRNRREEALKSLQEEFNNKTALHLSRLELESVILRLRKSCSIEKKEKITCKRNEIRHRPNCSYYDYIAFLEVDVPPFECSVCEKLLPGLGQYKVHLASHDGSLPFKCHVCGHGFQLASNLTVHLRRHVHDYTYRCEVCNKPCATTTEIKIHMRSHTGEKPFVCSICGQKSRTSSHLLVHTLRHQKRPRHKCKLCSKMFYETGTLNEHMSVHRNVRDKICDVCNKGFTSNKQLRQHQLIHSAEKKYLCKLCGKRFAQFAGLSGHMKSHGTKLSANASANTNSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -