Basic Information

Insect: Anastrepha obliqua
Gene Symbol: -
Assembly: GCA_027943255.1
Location: JAPTHQ010000062.1:1204052-1205584[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.22 30 6.7 0.3 1 23 61 84 61 84 0.95

2 12 2e-06 0.00028 22.5 1.4 1 23 98 120 98 120 0.99

3 12 0.001 0.15 13.9 2.9 1 23 127 149 127 149 0.99

4 12 1.7e-07 2.3e-05 25.9 1.2 1 23 155 177 155 177 0.99

5 12 0.0015 0.21 13.4 4.8 1 23 184 206 184 206 0.98

6 12 7.8e-05 0.011 17.5 0.4 1 23 212 234 212 234 0.96

7 12 1.3e-05 0.0018 19.9 0.5 1 23 240 262 240 262 0.97

8 12 1.9e-06 0.00026 22.6 0.6 1 23 268 291 268 291 0.98

9 12 4.5e-06 0.00063 21.4 2.3 1 23 297 320 297 320 0.95

10 12 0.00011 0.016 17.0 1.8 1 23 326 348 326 348 0.97

11 12 0.00016 0.022 16.5 1.6 1 23 354 376 354 376 0.97

12 12 0.00074 0.1 14.4 0.2 1 22 382 403 382 406 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.22	30	6.7	0.3	1	23	61	84	61	84	0.95
2	12	2e-06	0.00028	22.5	1.4	1	23	98	120	98	120	0.99
3	12	0.001	0.15	13.9	2.9	1	23	127	149	127	149	0.99
4	12	1.7e-07	2.3e-05	25.9	1.2	1	23	155	177	155	177	0.99
5	12	0.0015	0.21	13.4	4.8	1	23	184	206	184	206	0.98
6	12	7.8e-05	0.011	17.5	0.4	1	23	212	234	212	234	0.96
7	12	1.3e-05	0.0018	19.9	0.5	1	23	240	262	240	262	0.97
8	12	1.9e-06	0.00026	22.6	0.6	1	23	268	291	268	291	0.98
9	12	4.5e-06	0.00063	21.4	2.3	1	23	297	320	297	320	0.95
10	12	0.00011	0.016	17.0	1.8	1	23	326	348	326	348	0.97
11	12	0.00016	0.022	16.5	1.6	1	23	354	376	354	376	0.97
12	12	0.00074	0.1	14.4	0.2	1	22	382	403	382	406	0.92

Sequence Information

Coding Sequence: ATGAATGAAGAAAATTCAGATGATGAGCATGATATAGACGAGAACGCACAGTTTGGAAAAATAAAGACGATTTTCGAGCAGCAGGACAATATATACTTTTGTCTGTTGTGCAAAGAACGAAAAGCAATGGTTGCGGATCCATTTACGGAGCATATGATTAAAAATCATGGCATACACTTTTATACTTGTGAATTTTGTTTCGCTGGTTTTCTTTCTAATGAGAGTTTAAAGGAGCATGTTGACAAAGTGCATTCCCATCTATATATTGCAATGCAAGAAAATTCTGAAGAATATCAGTGCAATATATGTCAACAAGTTTTCGTCAGTCAAAGATTGCTGCGTTTGCACAAACGCACTCACAACATCGCTACCTTTCAATACGAATGCTCCGAGTGTCAGAAGAAATACAGTTGCCGGAACTTGTTGATTGATCATATGAATACGCACACTGGGGAACGACCATATAAGTGCACGAAATGCCCCAAGAAGTTCGCGTCAAATTATACGTTGCAGGCGCATATCAAAATTCATAGTGAACGGCTGCGTCCATATAAGTGTGATAAATGTAACAAAGCATTCCTTAACCAGCAAACTCTTACGCACCATAAGAAGCTACACCTGGGAGAGAAATCATTCATTTGTGATATATGTTCGAAGGCCTTCGGCACACAGCACAACCTGGATGTGCACAAGATTGTACATTCTGGGCAACGACCGTTCATATGCCGAACTTGCGGCAAATCTTTTTCACGCCGCGCGGAAATCAAAGATCATGAACGTATACATACTGGGGAAAAACCTTATAAATGTGATATGTGCGATGCCGCTTTCGCCCAACGCTCAAATCTAATGACACATCGAAAGTCTACACATTTAAATGAAAAATTACACAAATGCGATCAATGTGGTCGTTCTTTTAAAAGACGTCGCTTGTTACAGTATCATATTAACGCCGTGCACACGGGTGTACGCCCCCATGAATGCGAAATATGTGGTTCGTCGTTTGTTTATCCAGAACATAAAAAGAAACATATGCTCATACATGGAAACTCTAAGCCATATACCTGCGAAGTATGCGGCAAAGAGTTCAACAGTTGTGCAAATCGAAACGCTCATCGTTTTGTTCATAGCTCCAAAAAACCATACGAATGTCTCAAATGCGGTGCCGGGTTTATGAGAAAGCCACTGCTTTTGGCACATATGAAACATGCAGGTCACACGAATGACACTATAATAATAAACCAGCCGCATATTAACGACAAAGGCACACTGACATTAGGGAGTGAGATGATTATGGTTGACTCGCATGATACAACAAATGAACAGAATGAAGTTCCTGCCCATTTTTTACAAGAATCTAATACAAGTGTTTGTAATGAAACACTGCAAAGTATTCCGCAGAGTACAGCTGATATTATATGTGATGTTGCAGAAACGGATAGCGTGCAGTATCTGGAGTTTGATGATTTAGACAAAGATGGTCACCAAATAATAACTTGGGTAGATATTAGGCGAGATAAAGAAGAGATTTAG
Protein Sequence: MNEENSDDEHDIDENAQFGKIKTIFEQQDNIYFCLLCKERKAMVADPFTEHMIKNHGIHFYTCEFCFAGFLSNESLKEHVDKVHSHLYIAMQENSEEYQCNICQQVFVSQRLLRLHKRTHNIATFQYECSECQKKYSCRNLLIDHMNTHTGERPYKCTKCPKKFASNYTLQAHIKIHSERLRPYKCDKCNKAFLNQQTLTHHKKLHLGEKSFICDICSKAFGTQHNLDVHKIVHSGQRPFICRTCGKSFSRRAEIKDHERIHTGEKPYKCDMCDAAFAQRSNLMTHRKSTHLNEKLHKCDQCGRSFKRRRLLQYHINAVHTGVRPHECEICGSSFVYPEHKKKHMLIHGNSKPYTCEVCGKEFNSCANRNAHRFVHSSKKPYECLKCGAGFMRKPLLLAHMKHAGHTNDTIIINQPHINDKGTLTLGSEMIMVDSHDTTNEQNEVPAHFLQESNTSVCNETLQSIPQSTADIICDVAETDSVQYLEFDDLDKDGHQIITWVDIRRDKEEI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00082317;
90% Identity: iTF_00082317;
80% Identity: -