Basic Information

Insect: Anastrepha obliqua
Gene Symbol: su(Hw)
Assembly: GCA_027943255.1
Location: JAPTHQ010000168.1:2021893-2025652[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00018 0.026 16.3 2.0 1 20 124 143 124 145 0.95

2 12 8.7e-06 0.0012 20.5 0.3 3 23 196 217 194 217 0.93

3 12 0.034 4.8 9.2 0.1 1 23 223 245 223 245 0.95

4 12 7.7e-07 0.00011 23.8 1.8 1 21 252 272 252 273 0.95

5 12 1.3e-06 0.00019 23.0 0.9 2 23 285 306 284 306 0.97

6 12 8.2e-05 0.012 17.4 4.4 1 23 317 339 317 339 0.99

7 12 0.00011 0.016 17.0 0.8 1 23 345 367 345 367 0.97

8 12 7.3e-06 0.001 20.7 0.7 1 23 373 395 373 395 0.99

9 12 9.4e-07 0.00013 23.5 1.6 1 23 401 423 401 423 0.97

10 12 1e-06 0.00014 23.4 2.1 1 23 427 449 427 449 0.99

11 12 7.6e-07 0.00011 23.8 0.4 2 21 452 471 451 475 0.91

12 12 0.037 5.2 9.1 0.1 3 23 498 519 496 519 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00018	0.026	16.3	2.0	1	20	124	143	124	145	0.95
2	12	8.7e-06	0.0012	20.5	0.3	3	23	196	217	194	217	0.93
3	12	0.034	4.8	9.2	0.1	1	23	223	245	223	245	0.95
4	12	7.7e-07	0.00011	23.8	1.8	1	21	252	272	252	273	0.95
5	12	1.3e-06	0.00019	23.0	0.9	2	23	285	306	284	306	0.97
6	12	8.2e-05	0.012	17.4	4.4	1	23	317	339	317	339	0.99
7	12	0.00011	0.016	17.0	0.8	1	23	345	367	345	367	0.97
8	12	7.3e-06	0.001	20.7	0.7	1	23	373	395	373	395	0.99
9	12	9.4e-07	0.00013	23.5	1.6	1	23	401	423	401	423	0.97
10	12	1e-06	0.00014	23.4	2.1	1	23	427	449	427	449	0.99
11	12	7.6e-07	0.00011	23.8	0.4	2	21	452	471	451	475	0.91
12	12	0.037	5.2	9.1	0.1	3	23	498	519	496	519	0.94

Sequence Information

Coding Sequence: ATGTGTGATACCAGCAAAAAGTCTAGCTCGAAGGTCAAAGAACCTGGCAGCGCTGTAAAAATCTTAAACGAACGCGCTTCCAAACGCTCGAAACCAGTTAGTTCCGAGTCTAGTACACCGGCGAAGCATGTCAAACTTTCCATAGGAAATAGTAATACTGGTGAAAATAAGACAGACATGGATCATTATGTGCTTAAAACTATTAAGGACGAGGAAAATGTTGAAGGCGGAGAGACAATAGCCTTTGTGCTGTCTGATCAAAATGAGAAACAAAAAGATGGAACAAATGCCGTTGGTGAAGTTGCGGAAGAGCTGCAAATTAGCGAGGAGGAAGCTGATGACACTGATGGAAAAAATGATATGGTGGAGCATGTATGTGGCAAATGTTACAAAACTTTCCGCCGCTTCAGTGGGCTTAAAAATCATATGGAATTTTGTCGTTATGACAGTGGCTATCATTTACGCAAAAATGAAATGTTGAAAAACCTGGAAAAAATCGAGAAAGATGCTATAACAATGGAAAACAAAGATGTTTGCTTTTGTTGCAACGAAAGTTACGACACATTCCATTTGGGGCACATTAATTGCCCAGATTGCCCTAAATCCTTCAAATCGCAAATGAGCTATGAACGTCATATATTTATCACGCACTCTGAATTTGATGACTATCCCTGCTCGATTTGCAATGCAAAGTTACGCAGCGCAAACTTATTAAATTTACACGAAGAACAGCATAAAAATCGTGGCAAGCCATTTGCTTGTAAAATATGTGGAAAAGATTTTACCCGTGCCTACCATCTTAAACGTCATCAAAAATATTCTTCATGCTCAGCCAGTGGCACTGATTCTATGAAATGCAAAGTATGCGATAAGGCTTTCTTCCGTTTGGACAATTTGCGTGCGCATCTGCGGCAGCATTTGGGTACACACGTGGCAAAGAAACCCGAATATAGATGTCCGCAATGCAAAAATTGTTTTTACAGCCTATCAACATTAAATATACATACTCGAACACATACGGGAGAGCGACCTTTCGATTGCGATTTATGTGAAAAAAAATTTCCGTCATTAATTGCACTGAAGAAACATCGGCGATACCATACCGGTGAGAAGCCCTACACTTGTTCTGTGTGTAATCAATCATTTGCGGTTAAAGAAGTACTAAACCGTCATATGAAGCGGCATACGGGTGAACGGCCACATAGTTGCATGGAGTGTGATAAAAGTTTCATACAAGCATCTCAACTGCGAAATCATGCACGAACGCATGTTTTACCATACGAATGTTCAGACTGCGAACAAAAATTCAAAACACCAAAGCAGCTGGAGAAACATAGAAAGACTCACGTGAAAAAATGTAATGAGTGCAATAAATCATTTACGGATCAGTCTCAACTGGAAGATCACATGGCAAATGTTCCTCATAAAAAATCAACCACAACACCTAGAAGGTCAAGCACCCGAAAATCTAAGACGCGTGCTCGCACTGATTGTGCTGTATGCGATGAGGACTTTAGTACCGTCAAGAACTTGCAATTTCATATTCTTAAAGTACATGAGGTGGATCCCGAAGATTTTGTAAATGAAAAGCCGAAAGAAAACAAAAAAAGTAAAAGCAGTGAAAATGTATATAAAATTGAAGGTGAAACTTCAAGCGAAATTCAGATTCTAAGCGAAACCGAAGGTAATGCCGCCATTATGGCTGCTGGTAGTGTGAACAGCAAAGAAATTTACAATAATACGCAAGATGGAAGCAATGGAGGTTTAGTTGTGAAGGAGTTTATCGTCAATGATCTGCCGAGGGCGGAGCGAGATGATGCAATTGTTCTTGAAGCATTCACCGTTGTACCATTGGATGGAGACGGTCCGATTGAAACAGTTACAATAGGCTCTATAGATGTATCGTCGGAAGTTAAAAAGGAACGACGTAAATCGCTGGCTGAATCGCTGGCGGTCGCTATCGGTAAAGAACCCATCACGCCAAGTGAACCGATTCAATTGAATGAAGAGGATATGAAACTTAAGGATAATGTTGGTAAATTGCTAGATATGTTAGTCGACAACAAAACATTAAAGAAATTTGGTTGGCCAACTAACAGCGAAGAGAACGTTTTGTGTCGCGTTATTGAAAATTGTGGCTACAACTTGACAAAAGATGCAGAAACATATCGTGATTGTGACTACGCAACGCGCATGCGTGAATATGTAAAATTGCTGTTTACGGTGGTGATTCACAATGACTCCATTAAAGAGTTGTTGAACAATTATCCAATCGACGAAGTAGTCGAATATGTTTTGGGTAATGATGATGACGAAGACGATGATGTTGATAACGAATTTGATGACAATAGTAATATGAAGAATTAG
Protein Sequence: MCDTSKKSSSKVKEPGSAVKILNERASKRSKPVSSESSTPAKHVKLSIGNSNTGENKTDMDHYVLKTIKDEENVEGGETIAFVLSDQNEKQKDGTNAVGEVAEELQISEEEADDTDGKNDMVEHVCGKCYKTFRRFSGLKNHMEFCRYDSGYHLRKNEMLKNLEKIEKDAITMENKDVCFCCNESYDTFHLGHINCPDCPKSFKSQMSYERHIFITHSEFDDYPCSICNAKLRSANLLNLHEEQHKNRGKPFACKICGKDFTRAYHLKRHQKYSSCSASGTDSMKCKVCDKAFFRLDNLRAHLRQHLGTHVAKKPEYRCPQCKNCFYSLSTLNIHTRTHTGERPFDCDLCEKKFPSLIALKKHRRYHTGEKPYTCSVCNQSFAVKEVLNRHMKRHTGERPHSCMECDKSFIQASQLRNHARTHVLPYECSDCEQKFKTPKQLEKHRKTHVKKCNECNKSFTDQSQLEDHMANVPHKKSTTTPRRSSTRKSKTRARTDCAVCDEDFSTVKNLQFHILKVHEVDPEDFVNEKPKENKKSKSSENVYKIEGETSSEIQILSETEGNAAIMAAGSVNSKEIYNNTQDGSNGGLVVKEFIVNDLPRAERDDAIVLEAFTVVPLDGDGPIETVTIGSIDVSSEVKKERRKSLAESLAVAIGKEPITPSEPIQLNEEDMKLKDNVGKLLDMLVDNKTLKKFGWPTNSEENVLCRVIENCGYNLTKDAETYRDCDYATRMREYVKLLFTVVIHNDSIKELLNNYPIDEVVEYVLGNDDDEDDDVDNEFDDNSNMKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01045632;
90% Identity: iTF_00082311;
80% Identity: -