Aobl024670.1
Basic Information
- Insect
- Anastrepha obliqua
- Gene Symbol
- -
- Assembly
- GCA_027943255.1
- Location
- JAPTHQ010000199.1:2969125-2987221[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.2e-10 2.2e-07 31.8 0.2 3 45 255 297 254 297 0.92 2 3 6.3 1.1e+04 -2.5 0.0 28 37 327 336 318 342 0.75 3 3 1e-08 1.9e-05 25.6 0.1 11 44 373 405 368 406 0.90
Sequence Information
- Coding Sequence
- ATGTCGGAAATTGAGAACCAAGATACCAACGGTACGAGTAATGGAGATGTGCCTGAAATTGAACTGATCATAAAGGAAGAATTTGTGCTTGAAAATGAAATTTTGGGGAATGCGAACGGGAGCAAAATCAACTTAGCACCGAGTGAAGTCTTGAATGGCGTAGATGAGAAAGAGAATATCGCTCAATCGAAATTATATCTCAAGCCACAGCAGCAGCACCAAAATATCAATGAGTGCAAAACAATAAACTCTGAAAAACAACCCTCTCCGCTCAAAGATGTCTTAGCGCAACGCAGTAACGAAGCTACAGAGGATCATGTTCTTGCACTTACTCATCACGATAGTCAACATTTTTACTTCGAATTTGTAACCCCGAAACCGGACGAAAACTTATCACAGACTGCCTCAATTACAGAACGCACAACAACCAACCAGTTAAGTGATAATTTTAACAGCGGAAAGATTGACGACCGCCTGCCCATAAATCAGAAAAATAGAGTTCCATTATCTCAAAATCAGATGATGGAAGAAGCAACAGTCAAAGAGGAACATTTGCGTTGCAGTAGCGCAGTGAGTAATTTAGACTTCGCCGCTATGGTAGCTGAGGCATGCGAGGGAATTTTCGATGAAATTGAAAATGATCTGCGATCATATACCGACAGTAGCGATAGCAATAGCAATAGTTACCAAGGGGTTGAGATTACTTCGGATTCTGGCGATCTCAGTGCTCCAGCGAAGAGAAAAAAGAGTGCCCATAACTCTGAAGCGGTTCAACTTGCGGTGAATGCTGTGCTGGAAGGTGGCATGAGTCTGGGTGAGGCGGCAAAACGCTATAATGTGGTGCGTTCAACCGTGTCCTCACGTGTAGCAAAACATCCCAAACGTAAAAGACGAAGGGCTAACAAGGAATTAGATGAGCTTATTCACAGTAAACTTATGGCCGGTATACAAATATCGCAAATATCACGCTCTTTACATGTGCCCAAATCGACCGTTCATCTACATAAAACAAGACTTAAGGAGAGTGGAATGTTGCCGCCTGTATGGATCAGGAACGGCAGTAAGGACATGGTTGATCATGGCGTTCAAGAGCGATTAAAGCAAGCATATCGAGGTCACATCGTAAACGGCATGTCAGTGCGTTTTGCTGCAGAATTCTTCTCGCTCCCGCTTACGACCTTATGGCGATACATAAAACGAAGAAAAACCGCGTCTACAACTGCAGTTACTGATGACAGTAGCAAAAGTGTGCCGGTGGAATGCTCGAACGACCTCGAGGAAAATACACTTCATAATGCTTCGAATGCGTTTGATGATTTAGATATAGATGAGCAATCACAAATGCAGGAAAGCAAGTCGCCCTGCGTATCACCTAAATGTTATACAGATTTGCTAACGGTTTTTGATAAAGATGAAGAAATGCTAGAGCAGTCCTTGCTGGATCATCTTTTAGAATAA
- Protein Sequence
- MSEIENQDTNGTSNGDVPEIELIIKEEFVLENEILGNANGSKINLAPSEVLNGVDEKENIAQSKLYLKPQQQHQNINECKTINSEKQPSPLKDVLAQRSNEATEDHVLALTHHDSQHFYFEFVTPKPDENLSQTASITERTTTNQLSDNFNSGKIDDRLPINQKNRVPLSQNQMMEEATVKEEHLRCSSAVSNLDFAAMVAEACEGIFDEIENDLRSYTDSSDSNSNSYQGVEITSDSGDLSAPAKRKKSAHNSEAVQLAVNAVLEGGMSLGEAAKRYNVVRSTVSSRVAKHPKRKRRRANKELDELIHSKLMAGIQISQISRSLHVPKSTVHLHKTRLKESGMLPPVWIRNGSKDMVDHGVQERLKQAYRGHIVNGMSVRFAAEFFSLPLTTLWRYIKRRKTASTTAVTDDSSKSVPVECSNDLEENTLHNASNAFDDLDIDEQSQMQESKSPCVSPKCYTDLLTVFDKDEEMLEQSLLDHLLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00081121;
- 90% Identity
- iTF_00081121;
- 80% Identity
- -