Basic Information

Insect: Anastrepha ludens
Gene Symbol: Sry-delta
Assembly: GCA_028408465.1
Location: JAPVRI010023163.1:848-2077[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0001 0.018 16.9 2.5 3 23 186 207 184 207 0.95

2 7 0.00032 0.055 15.4 0.1 2 23 215 236 214 236 0.97

3 7 6.6e-05 0.011 17.6 3.8 2 23 243 264 242 264 0.96

4 7 0.12 21 7.3 0.8 1 23 270 292 270 292 0.81

5 7 0.00067 0.11 14.4 0.6 2 20 300 318 299 321 0.92

6 7 7.1e-06 0.0012 20.6 2.3 1 21 328 348 328 350 0.95

7 7 0.0012 0.19 13.6 1.0 1 23 375 398 375 398 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0001	0.018	16.9	2.5	3	23	186	207	184	207	0.95
2	7	0.00032	0.055	15.4	0.1	2	23	215	236	214	236	0.97
3	7	6.6e-05	0.011	17.6	3.8	2	23	243	264	242	264	0.96
4	7	0.12	21	7.3	0.8	1	23	270	292	270	292	0.81
5	7	0.00067	0.11	14.4	0.6	2	20	300	318	299	321	0.92
6	7	7.1e-06	0.0012	20.6	2.3	1	21	328	348	328	350	0.95
7	7	0.0012	0.19	13.6	1.0	1	23	375	398	375	398	0.96

Sequence Information

Coding Sequence: ATGCGTTGTCAACTATGTCAAATAGCAGTTGGTGGATTTGATGACCTGGaggatataaacaaaaaaactcctTTCTCTAGAAAGTCTATCCGCGCAATTATAACTTATTTAGCGAAAACAGCTAAACCCGCTATAGATGTGCCATGGAGTGGTGACACCTATGCCAACATATGTAAAATTTGTGTTAATGACATCTTAATTTATGATGAGTATATGGTAAAACTATTAGAAGTACAAAAACGGATTATTTCGTCTTTGCGAAATCCGCCGATAAATGAAGAATATCTTGTGATTCAATCATTAGACGAATCTATGAGCAATgttgatttaaaaattgaaaaggtTGAAATAAGTGTCGAAGCTAATATTGAATCAAGTGATTGCGGTAATGATGATGGAAATAACTCTTCGCTTGAAGATAACGAAATAAAAGAAACTGATGTAAATTACAATGAAGATTTTGGAAACGTCGAAGATTTGGAAGATTTAAGTGAATTAGATGAAACTGTTGAGGAATCTACCCCAAACAATAGGAGATGCAATGTTCCGGTAAATTGTCATGtatgtaacaaaatttttaaaaataaaacgcaGCGACGTCGCCATGTAAACGTTGTACATAAGCCCACTAAACAAATTTGGAAATGTGAAATTTGCGGAATTACCACGAAGGATGAAGAATACTTAGAATTGCATAAGAATATTCATGAAGGAAAATCAGATTTAGAGTGTCGATACTGCAACAAACGGTATACCCGAAAAATCAATGTTATACGGCATATGCACAAGCATTGggacaaaaagaaatttcagtGCGAAAGATGTGGTTTAAGATTCTCCGAGAGGCCAATTTATTATAACCACAGATTACAACATGAAGCTGAGGAAGACCCACTTATTTGTGAAGTGTGTAATCAATCGTTCAAAACTCGGCGCACCTATAGGAATCATTTGTGGGTGCATCGTGAAGATCGACCACGTTATAGCTGTGAAATTTGTGGCAAgacttttgttgaaaaatatacaCTTAAAGTGCATCTGAGGTGCCATAATGGAAAAGAGGAAGAACGTAGTACTGGACGTCGGAAAATCATAAATGAACCACGGCAGGAGGAACAAACCTTTGAATGTGTCATATGTGGCGAGCAATTTTCCTCTAAAGATTTATGTGATCAACACATGAAAGTTCAACACGATGTAATTTTGAGagcggaaaatatttttatgtaa
Protein Sequence: MRCQLCQIAVGGFDDLEDINKKTPFSRKSIRAIITYLAKTAKPAIDVPWSGDTYANICKICVNDILIYDEYMVKLLEVQKRIISSLRNPPINEEYLVIQSLDESMSNVDLKIEKVEISVEANIESSDCGNDDGNNSSLEDNEIKETDVNYNEDFGNVEDLEDLSELDETVEESTPNNRRCNVPVNCHVCNKIFKNKTQRRRHVNVVHKPTKQIWKCEICGITTKDEEYLELHKNIHEGKSDLECRYCNKRYTRKINVIRHMHKHWDKKKFQCERCGLRFSERPIYYNHRLQHEAEEDPLICEVCNQSFKTRRTYRNHLWVHREDRPRYSCEICGKTFVEKYTLKVHLRCHNGKEEERSTGRRKIINEPRQEEQTFECVICGEQFSSKDLCDQHMKVQHDVILRAENIFM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00082470; iTF_00081677; iTF_00083439;
90% Identity: iTF_00082470; iTF_00081677; iTF_00083439;
80% Identity: iTF_00082470;