Basic Information

Insect: Anastrepha ludens
Gene Symbol: grau
Assembly: GCA_028408465.1
Location: JAPVRI010131637.1:7168-9496[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.73 1.2e+02 4.8 0.2 3 23 293 314 291 314 0.76

2 10 0.16 27 6.9 1.0 6 23 323 340 315 340 0.95

3 10 0.0019 0.31 13.0 3.7 1 23 346 369 346 369 0.95

4 10 4.1e-05 0.0069 18.2 0.9 1 23 377 399 377 399 0.98

5 10 0.00033 0.057 15.3 0.6 1 23 404 427 404 427 0.96

6 10 0.19 32 6.7 0.1 2 23 434 455 433 455 0.95

7 10 6.5 1.1e+03 1.8 6.1 2 23 464 485 463 485 0.90

8 10 3.6e-05 0.006 18.4 0.2 1 23 492 515 492 515 0.96

9 10 1.2e-05 0.002 19.9 0.8 1 23 521 543 521 543 0.98

10 10 2.5e-05 0.0042 18.9 4.9 1 23 549 572 549 572 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.73	1.2e+02	4.8	0.2	3	23	293	314	291	314	0.76
2	10	0.16	27	6.9	1.0	6	23	323	340	315	340	0.95
3	10	0.0019	0.31	13.0	3.7	1	23	346	369	346	369	0.95
4	10	4.1e-05	0.0069	18.2	0.9	1	23	377	399	377	399	0.98
5	10	0.00033	0.057	15.3	0.6	1	23	404	427	404	427	0.96
6	10	0.19	32	6.7	0.1	2	23	434	455	433	455	0.95
7	10	6.5	1.1e+03	1.8	6.1	2	23	464	485	463	485	0.90
8	10	3.6e-05	0.006	18.4	0.2	1	23	492	515	492	515	0.96
9	10	1.2e-05	0.002	19.9	0.8	1	23	521	543	521	543	0.98
10	10	2.5e-05	0.0042	18.9	4.9	1	23	549	572	549	572	0.97

Sequence Information

Coding Sequence: atgatttgtcGATTGTGTCTAAAAGATATTACCGAGGTAATAAACATTTTCGACGAAATAGGCACTGAATTAAATGTGGCCGCTGTGCTGGCTAAACACTTTTGGTTCGAGCCAAGAAGCGACGACCCCATATCAACAGCAATATGCAATTCCTGTTGGATTAGCGTATCCAACTTCAATGAGTTTTACTTAGGTGTGGAAGAGGCTCATCGTCTACTAACCGAACGATTTTTATTGAAGAGTGATGTTGCACCAAGGGGCCGTAAGCAACATAGTTATTCGGTTAGTGACGAGAAGGTAGTCGATGAATGGTTACAAACAAGCTTATCAACCACACTATCCAAAACTGAGAGTGGTggagaaaaagagaaaatagtAGACGATTCATTCGAAACCCCTAACCAAAATAAGTCGACTACCGATGAGGAAAACCACGAGGAACCGAAGTTGCTTAAGAACGAACTGTTATGGAACGATGATGAACGCTCTATTTACAGTGAATCTTTTATAGAAGATGTGATGGGTCTTGTTGAAGAAAGCGAAGATGCACTTGCTTTGCCACCTGAAAAAAAGCTGCGGGTCACTCGCTCGAATACAAAAAAGAACTCGGAGCACAACAAAAGCAGTTCAAATATTGATGCACCAATAAATCCCGATGAGGAGAAAAAAGCAGAAACTGAAAATTCTATAGGAAATAAGAAACGACGCGGACGGCCACCGAAACTTAGATCTGAAACCACTGACGATGAGTCGCCGAAAAAAGAAAAGTCAAAATCAAAGAAGAATTCAAACGAAGGAGATGATTCCCAACAAGAAAGTTACGAGGAACGAATGCGACAAATCGATGAAAAAATTGCGCAATGCATTCGCTTAATTTGTGACATCTGTGCATCCGAGCAGCCGACCTTTTCCCAATTGCGCAAGcatatggaaaaaatgcacCAGTGTAAAGGATATGCAACTTGTTGCAATAAAAAGTTCAACAAACGCGCACTGCTGGTGGGGCATattgaaaaacatataaatCCGGATTGTTACAGATGTGAGTCGTGTGACAAAACATTTGCGGACAAACAATGCATGCGGAATCATTTCTTGATCAAACACCAGCCTGAAGAAGAAAAGCAATACCAATGTGAGCATTGCCCCAAGCGATTTGCGCGCCCCTATATCCTCGAACAACACCGCCTTATTCATGAAGAACGTAAACACATCTGTGAAGTCTGCAATAGGGGGTTTGCCTCATACAACTGGCTCGGCACACATATGAAGACAATGCACTCGGGCTATGGGGCCACTATGTGTGATGTTTGTGCGAAGGTTATACGAGGCCGCACAGCCTTTGCGCGCCACCAATTAGAACACTCCGGCATTGTATTGCCAAAGGTCCAATGCGATAAATGCGGGTCCTGGCATAAAGATAAGTACAGTTTGCAAAAACATAAACGACGTCATAACGATGACGGAACAGTGCACGTTTGTAGTATTTGTGGTAAGGTGGCACCAAATCGTAGTGCTCTCCTCAGCCATCAGCGGTATGTACATAAATCTGCGCGCGCATTCGAGTGCAGTGTTTGCAAGAAGGCTTTTAAGAAAGCCATCACTTTGAAGGAACATATGACCATGCACACTGGCGAGGTTTTGTACAGTTGTCCGCACTGCCCAAAAACTTTTAATTCCAATGCGAATATGCATTCGCATCGCAAAAAAATGCACCCAAAAGAGTTTGAAGAGACGCGCAAACAGCGACGCGAAAACGCCGCCAAACCTGTTATTCCTGCTGATGGGAAAGAGGATGCAACAGACTCTAAAACGGAAGAAAAGcaatataaatcaaatttaGATAACAGCAGTGATGATTCCTTGCCGCAAGTGATTCTTATTAAATCAGACGATGGACGCGAAACACACAATATATTGGTGACAACTGAGGAGGGTTTCAGTGACAACGACGAGGATGGGAATACTAATGAAAACAGTATAGTTTTTaccattaattaa
Protein Sequence: MICRLCLKDITEVINIFDEIGTELNVAAVLAKHFWFEPRSDDPISTAICNSCWISVSNFNEFYLGVEEAHRLLTERFLLKSDVAPRGRKQHSYSVSDEKVVDEWLQTSLSTTLSKTESGGEKEKIVDDSFETPNQNKSTTDEENHEEPKLLKNELLWNDDERSIYSESFIEDVMGLVEESEDALALPPEKKLRVTRSNTKKNSEHNKSSSNIDAPINPDEEKKAETENSIGNKKRRGRPPKLRSETTDDESPKKEKSKSKKNSNEGDDSQQESYEERMRQIDEKIAQCIRLICDICASEQPTFSQLRKHMEKMHQCKGYATCCNKKFNKRALLVGHIEKHINPDCYRCESCDKTFADKQCMRNHFLIKHQPEEEKQYQCEHCPKRFARPYILEQHRLIHEERKHICEVCNRGFASYNWLGTHMKTMHSGYGATMCDVCAKVIRGRTAFARHQLEHSGIVLPKVQCDKCGSWHKDKYSLQKHKRRHNDDGTVHVCSICGKVAPNRSALLSHQRYVHKSARAFECSVCKKAFKKAITLKEHMTMHTGEVLYSCPHCPKTFNSNANMHSHRKKMHPKEFEETRKQRRENAAKPVIPADGKEDATDSKTEEKQYKSNLDNSSDDSLPQVILIKSDDGRETHNILVTTEEGFSDNDEDGNTNENSIVFTIN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00083397; iTF_00081628;
90% Identity: iTF_00083397;
80% Identity: -