Basic Information

Insect: Anastrepha ludens
Gene Symbol: -
Assembly: GCA_028408465.1
Location: JAPVRI010068066.1:3507-4730[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.2e-05 0.0021 19.8 3.4 1 23 151 174 151 174 0.97

2 8 0.018 3.1 9.9 2.1 2 19 188 205 187 210 0.90

3 8 6.8e-05 0.012 17.5 5.7 2 23 214 235 213 235 0.98

4 8 0.00038 0.064 15.2 3.5 1 23 243 267 243 267 0.97

5 8 1.1e-05 0.0019 20.0 0.7 1 23 273 295 273 295 0.98

6 8 1e-05 0.0017 20.1 0.8 1 23 301 323 301 323 0.96

7 8 0.00038 0.065 15.1 3.7 1 23 329 351 329 351 0.90

8 8 1.8e-05 0.003 19.4 0.1 1 23 357 379 357 379 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.2e-05	0.0021	19.8	3.4	1	23	151	174	151	174	0.97
2	8	0.018	3.1	9.9	2.1	2	19	188	205	187	210	0.90
3	8	6.8e-05	0.012	17.5	5.7	2	23	214	235	213	235	0.98
4	8	0.00038	0.064	15.2	3.5	1	23	243	267	243	267	0.97
5	8	1.1e-05	0.0019	20.0	0.7	1	23	273	295	273	295	0.98
6	8	1e-05	0.0017	20.1	0.8	1	23	301	323	301	323	0.96
7	8	0.00038	0.065	15.1	3.7	1	23	329	351	329	351	0.90
8	8	1.8e-05	0.003	19.4	0.1	1	23	357	379	357	379	0.99

Sequence Information

Coding Sequence: ATGCTTAAGGTACTTCCCAGCATCACTTTAGGAAGCAACGCAAGTGCAAAATGTGGAGAAATCCATTGTCACAGTTCCACGGAATTTACCATAATATGCACACTATGCGAACTGAAGTCATTCGATTACGAACATTTCATGTTGCATTGTAAAAACGTACACTTCGAAAATGATTTGTTGAGGACAGAGGAAGCCTTTGTGAAAGATGAGCCCATCATTGAAGACAACAGTATTGACCATGACTTCATGGATGAGTCTGACTTTGACATTTCTGATGAAGAGGACGATCATTCTGGGTTACGTGTAATGAAATGGGATCAGAAAAACACCTTATCGGAGTCTCTGAACAGTGGATACAGAAATTATGCTGAAACAAATCCTGATGATGAAGATTACCTGCCAACTTCGGATCAACAAAAGAAACGAAATAGGGACCGCCATTCTCAAGCGTACAAGTGTGAAGTGTGTTCGCGTACGTACAAAAGTCAACACAATTTGCGTTTGCATTTGGAAAAATCACATAATCCGGTTACAGAGAAGGTTGTAGTTATACAAATGCAAAAATGCGAAGAATGTACGGAAGAATTTAAGACATTGCGTAGCTTAGAAGAGCATTGCATATCAAAACATGGAGGAATGAAATGTACATATTGTGATAAGAGATGTACTTCGAGAACAAATCAGCAACGTCACATGGAAACTCATACGCATGGAACGGAGCGAAGCTTTGTCTGCGATTACGAAAATTGTACGAAACGTTTCTTTACACGTCGACAATTTCAAGCACACAAGCGCACCCACACCAAAGGCAAGAACTTTATTTGTGATATATGTGGCTATTCTTGCCGAGTACCTGAAATGCTTAAGGTGCACTATCGTTCACACACGGGAGAAAAACCTTTTGCTTGTGATGAATGCGGAAAATGCTTTGTATCTAAATCGGCAGTTAGAGAGCACAAAGCATCGCACGGTACTGAACGCCCACATATGTGTAAGGTATGTGGGCGATCATTTGCTCGCGCTAAATCTCTGTATCATCATAATTTCTTGCATCTCGAAGAGAAGAAATTTAAATGCAAGTTATGTGGGCAAGCATATGCGCAATTGGCTGGGCTGGCCGGTCATATGAGGAGACACCGCGAGGATGGCCTTTGCTGa
Protein Sequence: MLKVLPSITLGSNASAKCGEIHCHSSTEFTIICTLCELKSFDYEHFMLHCKNVHFENDLLRTEEAFVKDEPIIEDNSIDHDFMDESDFDISDEEDDHSGLRVMKWDQKNTLSESLNSGYRNYAETNPDDEDYLPTSDQQKKRNRDRHSQAYKCEVCSRTYKSQHNLRLHLEKSHNPVTEKVVVIQMQKCEECTEEFKTLRSLEEHCISKHGGMKCTYCDKRCTSRTNQQRHMETHTHGTERSFVCDYENCTKRFFTRRQFQAHKRTHTKGKNFICDICGYSCRVPEMLKVHYRSHTGEKPFACDECGKCFVSKSAVREHKASHGTERPHMCKVCGRSFARAKSLYHHNFLHLEEKKFKCKLCGQAYAQLAGLAGHMRRHREDGLC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00081582; iTF_00083346;
90% Identity: iTF_00081582; iTF_00083346;
80% Identity: -