Alud010425.1
Basic Information
- Insect
- Anastrepha ludens
- Gene Symbol
- -
- Assembly
- GCA_028408465.1
- Location
- JAPVRI010043155.1:4760-7710[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0002 0.034 16.0 1.0 1 23 204 226 204 226 0.95 2 14 0.013 2.2 10.3 3.5 3 23 234 254 232 254 0.95 3 14 0.00012 0.021 16.7 0.1 1 23 396 418 396 418 0.98 4 14 0.00033 0.055 15.4 0.5 1 23 424 446 424 446 0.98 5 14 3.2e-05 0.0054 18.5 3.2 1 23 478 500 478 500 0.98 6 14 0.006 1 11.4 0.3 1 23 516 538 516 538 0.94 7 14 0.0093 1.6 10.8 0.5 1 23 544 567 544 567 0.98 8 14 0.19 33 6.6 0.3 5 19 578 592 575 593 0.91 9 14 0.00011 0.019 16.8 5.6 1 23 602 624 602 624 0.97 10 14 0.03 5 9.2 1.2 3 23 631 651 629 651 0.96 11 14 6.6e-06 0.0011 20.7 1.0 1 23 659 681 659 681 0.98 12 14 0.0034 0.57 12.2 0.2 3 23 689 709 687 709 0.97 13 14 0.00011 0.018 16.9 0.8 1 23 715 737 715 738 0.95 14 14 0.017 2.9 9.9 0.2 1 23 748 770 748 770 0.97
Sequence Information
- Coding Sequence
- atggacagacaaacatttGAAATACAATGGATAGAAGGAAATCCTGAAGACTTGAAAACTGCCGGTGGACAGTTGATCGTGAAACCACAAGTTCCATCCGAAGAAGAGCTACTTGCTAATGGTGTCGTTGGTGAAAGTCGTGCCACCTATCACCTAGTCTCTGGCACCGATGATAATGATGGAAATGTTCCAAACGAGGTTGATATCGATCAAATAGCGGCTGAAAATTTAATCTTCATGGCACGCGATGGGCAAATGGTAACGGAGATTATTGGTGACACTACTGACGATAATGGTGCCGTTGTTGTAGCCGCAACTGCTGGCATTGATTGTGCAGAGGCATTGCAACAAGCAGCGGCGGCAGTTTTAGCTTCCAATGGATTAACCCATGTGCAGGAAGATACCGGTGGaggatttgttgaaaattatgtCGACAATACACCACAAATGGTAACCGAAGAAGTGATAACAGATGACTGGGTACAACATCAGGGCGAGGAACGtgTGGAAATACCAGCAGATCAGATAATTTGTTCTGGTTCGCAGGTTATGCTTGATATGGAAGTACCTCTACCCACTGTGCAGGATGAATACACAGCGCTCCGGCCCTACCCATGTGATTTTTGCAGCAGACGCTTTCGTAAGAAGACAAGTTTGATGAATCACATTGTTGCACACCAGAACGATAGACCACATCTGTGCAAATTGTGCACGTCACGCTTTTTTCGTCGGTCTGATTTGATAAATCATTTAAAAGAACATGCCGACGCACCAGATCCTGAATTGGATGCAGAATTTATGAACTTTGTGGAGcaggaacaacaacaagcacgGCAGCCTATTGATCATTACTACGAACAGGACTGGACTACACAAATTAATTCATTGCAACGTAGCGCTAAATCAGTGCGCAAACCGCATAATGCTAGCGGTAACAGCTCATCTACCTCAACCTCGACGACAGTGGGACGCGGACGTATTAGTCGGTTAAAGCCAAAAGAAGAAAGCTATGTCCTGAATGAGCCTCTGCCAAATGATCTGGAAGAGGCGGTGAACGCAAACATAACTGCTGCCGCTTACGAAGACTGTCAGCAACTTCAAGCATCCACTGCTGTGGTAAAGTTCAGCCAAAACCAATCGCCAACACCTCAAGAGAGATTTCCTGTTATCGATGAGAGTAAACCGTTTGTCTGCCAACAATGCGGTTTGGCATTTGCGCGCGAGAAGGCATTGCTCGCACATACAAAGaatCATCGTGACGATCAGCCGCATGAGTGCAGTCAGTGTAATGAGATGTTTTGGGATGCAGCCAATCTCCAGGAGCACCTAAAAACACATCAGTTCGAAGACAGCAATTCAGAGTATGATCCAGATGAAGCGGAAGGGGAGGACACGCAAAGTGAATCGGAATCGGAGCGTTTGCATGGCGAATTCTACTGCAGCGAATGTGGCATGTCTTTTCACCGCGAAGATTTGCTTCGCAGACACTCCAAAACCCACACAAAAACCAGAGCTGAAGCTGACATGGAGAATGACAAAGATCGACATTGTTGCAACACTTGTGGCGAAACATTTGCCGAAGCGTTGGATCTATTGGCACACGCTGAAATTCATGCGCGCTATCCACCATTTAAATGTGTTCTATGTGGCGAAACTTTTTTTGAGGAGCTCACAATCAAGCGTCACTTGCAGACTCTACACCCACACGATATGACGCCCAACTCGTGCATCCTCTGTGGCAAAGAGTGCCGCGATCGCAAGGCTTTAATAAAGCACGCATGGGATCACTCACGCGAAAAATGCCACTCCtgttcaaaatgtggcaaaaactTTCACAATAAAGCGCGTTTGAAGCGACATATGGCCTCTCATCGTGACAAGTCTGTGATCTGTGATGTCTGCCACGAAGAGTTTCCTGATGGGCGCAGTCTTTCCAATCACCGCCACTCGCATACTAACTCTTCGGGCAAAATGTTTCCATGTCATGAGTGCGGCAAAACGTTTGGTTCACGGAGCTcgcaacaaatacatgtacgCATACACACCGGCGAAAGGCCATACGGTTGTCGTTTCTGTTGGAAGGCTTTCGCCGATGGCGGAACGCTGCGCAAACACGAACGCATTCACACGGGCGAGAAACCCTACGCCTGCTCAGTATGCTCGCGTGCATTCAACCAACGTGTGGTGCTACGCGAACATATACGATCACATCACTCGGGCTTGGATGCGAAACGCAACACTTACTACTGCACAGTTTGCTCCATGGAGATGTCGTCCTCAAGTGATCTGGTGCAGCATCTAATACAACATAGCGATATGAATACGGCTATGCAGCGACAGCCGGTGaccGGCCCACGTAAGTACAAACGGCGACGAAAGCTGAAACCGCACGAAATCGCGCGCTTACGCAGTGAGAGTCAGCAAAATGCCAATGGCAGTGACATTGAAATCTCAGATATGGACCTTGATATGGACAATGTGGATGATCTGTTAGGCATTGCAGATCCCCCC
- Protein Sequence
- MDRQTFEIQWIEGNPEDLKTAGGQLIVKPQVPSEEELLANGVVGESRATYHLVSGTDDNDGNVPNEVDIDQIAAENLIFMARDGQMVTEIIGDTTDDNGAVVVAATAGIDCAEALQQAAAAVLASNGLTHVQEDTGGGFVENYVDNTPQMVTEEVITDDWVQHQGEERVEIPADQIICSGSQVMLDMEVPLPTVQDEYTALRPYPCDFCSRRFRKKTSLMNHIVAHQNDRPHLCKLCTSRFFRRSDLINHLKEHADAPDPELDAEFMNFVEQEQQQARQPIDHYYEQDWTTQINSLQRSAKSVRKPHNASGNSSSTSTSTTVGRGRISRLKPKEESYVLNEPLPNDLEEAVNANITAAAYEDCQQLQASTAVVKFSQNQSPTPQERFPVIDESKPFVCQQCGLAFAREKALLAHTKNHRDDQPHECSQCNEMFWDAANLQEHLKTHQFEDSNSEYDPDEAEGEDTQSESESERLHGEFYCSECGMSFHREDLLRRHSKTHTKTRAEADMENDKDRHCCNTCGETFAEALDLLAHAEIHARYPPFKCVLCGETFFEELTIKRHLQTLHPHDMTPNSCILCGKECRDRKALIKHAWDHSREKCHSCSKCGKNFHNKARLKRHMASHRDKSVICDVCHEEFPDGRSLSNHRHSHTNSSGKMFPCHECGKTFGSRSSQQIHVRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACSVCSRAFNQRVVLREHIRSHHSGLDAKRNTYYCTVCSMEMSSSSDLVQHLIQHSDMNTAMQRQPVTGPRKYKRRRKLKPHEIARLRSESQQNANGSDIEISDMDLDMDNVDDLLGIADPP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -