Alud025066.1
Basic Information
- Insect
- Anastrepha ludens
- Gene Symbol
- hang
- Assembly
- GCA_028408465.1
- Location
- JAPVRI010100719.1:2978-8074[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 9.3e-06 0.0016 20.2 0.1 2 23 56 77 55 77 0.97 2 13 0.091 15 7.7 3.2 2 23 144 166 143 166 0.94 3 13 0.0023 0.39 12.7 0.2 2 23 175 197 174 197 0.95 4 13 5e-05 0.0084 17.9 0.3 1 23 210 233 210 233 0.98 5 13 7.2e-05 0.012 17.4 1.1 1 23 295 317 295 317 0.99 6 13 0.0011 0.19 13.7 0.9 1 23 325 348 325 348 0.96 7 13 0.016 2.6 10.1 0.1 2 20 356 374 355 374 0.95 8 13 1.6e-05 0.0026 19.5 0.1 3 23 447 467 446 467 0.98 9 13 3e-05 0.005 18.6 0.7 1 23 502 524 502 524 0.97 10 13 7.5e-05 0.013 17.4 0.5 2 23 585 607 584 607 0.92 11 13 0.31 53 6.0 0.8 2 19 627 644 626 646 0.92 12 13 0.01 1.7 10.7 0.2 3 23 662 682 662 682 0.98 13 13 0.00037 0.063 15.2 1.3 1 23 935 957 935 957 0.98
Sequence Information
- Coding Sequence
- atGGTGCTTGAATCCATTCGAGagtgtgtagCTGATGATGACGAAAACTCCAGTGAGCACGCAGCCAAGAAAATGCGCATAGATGGCGGTGGCGCTGTGACGACCAGCACAGGCTCTGGCTCCGGCAATGCCAGCGGTAGTGGCAACATGTATAGCAGCCTCAAGGAGTGTCCCATTTGCAATGCGGTCTTCAGCAACAACATAGGCCTCTCTAATCATATGCGCTCGCATAGCGCAGCTGCTCAGAACAGTAGTATGTCAGCAGCAGCGGCAAGCACCAGCAAATCATCACCAAGCGGGCTGACCATAACACCACAGCCACCCTCAAAACCAACAACCCCTCCAGCAATGCAGCATCAAACAGCAGTACAAAAGGCGATCTTCAAACGTAGTCTCGAGCAGGCTGCCGATCGCCGCTTCCGACGCATGCGTTGTCGCCTCTGCCAACGGCGCTTCTCGTCGAAGAAATCCTATCGTTTCCACATGCTGAACGATCATCAAATACGCAATGTGCAATTTATCAAATGCAAATTGTGCGATGCAGAGTTCGCGTACGAAAAGGGCTTGAAGGTGCACATGTTCAAGATACACAACACGCTGCTGAAGGACGAGATGATCGTCAAGCAATTTGAGTGTGATATTTGTTCGATTGTGTATCGCAGTGAGGATCAACTGCAGCAGCACAAAAAGACTGTACATGGCGGCGCTACAGCAGGGGCAGAGCAGAAAGCACAGCAGGGCGGTGATGAGGCGTTGGACGAGTCAAACACAGCCGCAAATCCCGCAGATCGCTCGGGCATATCGACGCCAGTGAGCAGTGTGGGCGCAGGCGGCGGTGATCGCAGCACGCTGGATACCTCAACAAGCGGACCGCTGTATTGGTATCAATGCAAGTATTGTCCATCGAACTTCAACACCAACAAGAAACTGGCAATTCATATAAATTCACATGACGAATTCGATTCCAATGACTATTCGTGCAAAGATTGCGGAAATGTGTACAGCGGACGCAAGAGTTTATGGGTGCATCGCTACAAGAAGCATCCACAATTTGCGGAACCCTCAGAGTGTGTGCTCTGCAAAAAGGTCTTCTTCGATAGTCAAATGCTGGAGAATCACATACCGACTTGCAATCGCAAACCGATCACGGCGACTGgcgctgtggccgagagtgccGGCCCACCACCAATTTACAAGCACAAGACCGGCGATGATGACGACGATGAGGCATCGCACGATGCCAGCGGTGTGATTACGACCAATGCGTTGGGTGGCGGCGAGCTCGAGATAACACCAATACCGGCGACCGGCCTGAAAATCAAGCTACCCGAAGTGGCGTGCACAATATGTGGGCAACGATTTGTCGATCAGGATTTGTTCGCcaaacacatacaaatgcacgAACTGGAATTGTATACAGATAATCCGCTTGCGGCCATGTTTGATACGGGCCCAGCGGATCCGAATCAATTCTACTTGGATCGGGTGAATGACAACGGCGAATATGCTTGTGATCTCTGTAACAAAACGTTTACACAAATGACTGCACTTAAAGTGCATCGTAAATGGCATTTCAGAGGTGATAGCAAACAGTGCCAAGCCGACGTGGATCATTCAACCAAAGCAGCGAGGCTATCATCTCAATCTCTGATCCAGACCAACCATCAACATCCACTGGGATTACAAGCAGTGGGTCTTATGCCCAATCCGCAGCACCACTCTTCAAAATCCCAGAAACGCAAACGCGAACTTAAATGTGAATATTGTCCCTCCACGTTCATTAGCAACAACAACCTGCGTCGCCACATCTATGAACTGCATAAAGACGAAATTGGAAATCTACCTGTGCCACCGAAAATCAATACAGATCCCTATCTGCATTGTCGTCGTTGTCAGCAAAAGTTCGAAACGAAAAGCGATTGGATCGAACATAAAGTGGCCGATGCGCGTGTAACGAAACCATTCGGTCCATTCCAGTGGGGCTGTGAGCTATGTGGCGCGTACGTGTCACGCAAGGAGAAGCTGATAAATCACATAAACAATCACTTGAAGGAGAAGGAAATAGTACCGGTGCAAGATCAACAGCCGGCGCATGATCAGAATCAGAATCGTGCGAAGTCGACGGtggtggcggcggcggcggcgtcGGGAAAAAATGTTGACGACATGATGGACGAGGTGGTGGTGAAGCGAGAACGGGATGATGATAAGGAAGAGTCAAATGATGGTATTAAGGAGGAGGAGGAGTCCGAAGAGGAGGATGGTGTGGTCGATGATGAAGCAGATGAGGAGGGTGAAGAAGAGCAGAAAGCGCGTGAAAGAGGGGAGACTGGCAGACGCGGTGCCGAATTAGATGATGAAGTCGATGAGGATGGTTCAGAGGACGAGTTAGATGAGGAATATGAAGATATGGGTGAAATGATGCAGGTTGCAATGACCGAGCATGCCAATCACGATGAAGCGGAGCAGGATGAAGATGACGGCGATGCCGATGATGGTGAGGAAGATGCAGACGCAGACGCCGACGAAGCAGACGACGTCGATGACGTTGATGTCCATAATGATGATTCGAATGATGTTACGGCGCCAAATGGTGGTGGTGCTTATGGGCGCGGACCGCCGGTAGCGTCGCAAGTCACAATTGAAGCTATACGCAATTCAACGGACACCACAGGCGACTCATCGCCGTCATACGACGAAGACGATGACGACGACAACGACTCGGATGCCGATAGCGATGCAGACAGCGGTGACAGTTCTTCGCAAGCATCCAAAACACCAGCACCAGCGCCGAAAGTGCGCTTTTCATGCGATCTGTGTCGTCTGTTCTTCGATTCGCAACAGGAACTGCAAAAGCATGTGAAGATGCATTTTCTCAACGGGCCCGGCTCGGTGTCATTGACCGAAATCAAGCCAAAGGCAGGCAACAAATCGagtcgcagcagcagcagtgatGTCGTGGCGGTGTAG
- Protein Sequence
- MVLESIRECVADDDENSSEHAAKKMRIDGGGAVTTSTGSGSGNASGSGNMYSSLKECPICNAVFSNNIGLSNHMRSHSAAAQNSSMSAAAASTSKSSPSGLTITPQPPSKPTTPPAMQHQTAVQKAIFKRSLEQAADRRFRRMRCRLCQRRFSSKKSYRFHMLNDHQIRNVQFIKCKLCDAEFAYEKGLKVHMFKIHNTLLKDEMIVKQFECDICSIVYRSEDQLQQHKKTVHGGATAGAEQKAQQGGDEALDESNTAANPADRSGISTPVSSVGAGGGDRSTLDTSTSGPLYWYQCKYCPSNFNTNKKLAIHINSHDEFDSNDYSCKDCGNVYSGRKSLWVHRYKKHPQFAEPSECVLCKKVFFDSQMLENHIPTCNRKPITATGAVAESAGPPPIYKHKTGDDDDDEASHDASGVITTNALGGGELEITPIPATGLKIKLPEVACTICGQRFVDQDLFAKHIQMHELELYTDNPLAAMFDTGPADPNQFYLDRVNDNGEYACDLCNKTFTQMTALKVHRKWHFRGDSKQCQADVDHSTKAARLSSQSLIQTNHQHPLGLQAVGLMPNPQHHSSKSQKRKRELKCEYCPSTFISNNNLRRHIYELHKDEIGNLPVPPKINTDPYLHCRRCQQKFETKSDWIEHKVADARVTKPFGPFQWGCELCGAYVSRKEKLINHINNHLKEKEIVPVQDQQPAHDQNQNRAKSTVVAAAAASGKNVDDMMDEVVVKRERDDDKEESNDGIKEEEESEEEDGVVDDEADEEGEEEQKARERGETGRRGAELDDEVDEDGSEDELDEEYEDMGEMMQVAMTEHANHDEAEQDEDDGDADDGEEDADADADEADDVDDVDVHNDDSNDVTAPNGGGAYGRGPPVASQVTIEAIRNSTDTTGDSSPSYDEDDDDDNDSDADSDADSGDSSSQASKTPAPAPKVRFSCDLCRLFFDSQQELQKHVKMHFLNGPGSVSLTEIKPKAGNKSSRSSSSDVVAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -