Alud025165.2
Basic Information
- Insect
- Anastrepha ludens
- Gene Symbol
- -
- Assembly
- GCA_028408465.1
- Location
- JAPVRI010101070.1:3052-7417[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0011 0.18 13.8 0.1 1 23 108 133 108 133 0.91 2 18 0.0032 0.54 12.2 3.8 2 19 144 161 144 164 0.93 3 18 0.0046 0.78 11.7 0.1 3 23 206 227 205 227 0.94 4 18 0.013 2.1 10.4 0.1 3 23 235 255 233 255 0.96 5 18 0.00032 0.055 15.4 0.4 1 23 261 284 261 284 0.92 6 18 0.00098 0.17 13.9 0.1 1 23 289 311 289 311 0.98 7 18 0.057 9.6 8.3 0.4 1 20 320 339 320 341 0.95 8 18 0.00036 0.061 15.2 1.8 1 23 360 384 360 384 0.91 9 18 0.038 6.4 8.9 0.8 1 23 389 411 389 411 0.98 10 18 0.0015 0.25 13.3 1.5 2 23 428 452 427 452 0.93 11 18 0.0011 0.18 13.7 0.1 2 20 456 474 456 476 0.94 12 18 0.0094 1.6 10.8 0.8 2 23 483 505 482 505 0.94 13 18 0.058 9.7 8.3 0.1 3 23 512 533 511 533 0.94 14 18 0.018 3 9.9 0.4 2 23 537 559 536 559 0.95 15 18 0.041 6.9 8.8 4.7 1 23 565 588 565 588 0.90 16 18 0.0066 1.1 11.3 0.5 1 23 593 615 593 615 0.98 17 18 3.8e-07 6.4e-05 24.6 2.1 1 23 621 643 621 643 0.98 18 18 0.0024 0.4 12.7 0.4 1 23 649 677 649 677 0.92
Sequence Information
- Coding Sequence
- ATGGCTGAAGAAATGCCAGAAAATACCAGCGAAGATGAACAGTTTTCGGACGCTCCTGAAAGTATCGAAAGCGATGATGAAGCGCTACCAAATTTTGCCTTCCCCAATCTAAAAGATGATCCAGATTTGTTGTATGAATTCAACACTGAATACGACAATGCAGATAGCCTTAGGGAATATTTAGATGAAGCCGTCGCAAGTAACTTTAACACATTGGAATTCAAATGGAATAGTGAATGTTTGATATGCTGCGAGCAGTTTGAAGAGTATCAAGACTTGTTGCAGCATTGCATAATGTTCCATGAGAATGAGTTCAACGAATATGCATGCACCTTGCAGGATTGTGATGTGGTGTTTCGAAGTGAGTACTCACTTGCCAGACACTTGGTATTGCGACACAGCGATTTGCAAAGCATAAAAATATACGGTAGCTGCCCCTATTGCGATCTACGGTTCTCAAACTTTCATCAACTGAATAAGCATTCCTGTTATCGCAAACTAACGCGCAGAGCTTGCACGCAGCCTTATTGCCAATATTGCAAACAAGAATTTGTCTCACACAAAAGATTTGTTTTTCACTTGCAATTTCATTTGGCAAAACGGCGTTCTAAAATCTGTTTGATTTGCAACAAAGATTTTACCAATGTAGACGAGTTCTTCGTGCATGTAAATTATGAGCACGAACCACCGGGAACACTGGCGTGCACCATCTGTGATCGCATATTCGCAGAAATGGAGCCGTTCGTCAAGCATCAAAATTCGCATAAAATAAAGCCTAAATATGAGTGTGATGAATGTCTAAGAACTTACCGCAACAAAAAATTACTACAAGCACACAagGAAGGTGTGCACACCAATATTGAATATAAATGTGACTTATGTCCGAAAATATTTCCCAGTTTAGCCATCCTTCAAAATCACTTGAAATGGCATGAGTCTGATGCCGAAGTGCGAGTGTTTACCTGTACAAGTTGTGGCTTGATTGGAAGTGACTGCGACAGTTTAGAGAAACACACTTCAGACCTCAGCACCGACTGTTTTTATGGTGAAATTGAAGAGGAAATACTCATTGTAGCCTACAGCTGTCATTTCTGCGCACAAGATTTTAAAGATAAGGATTCACTTAGAAAGCATCGTGCTACGGGCGtccatgaaaatgaaatgttttactGTCCCCTATGCAATGAAGAACTCGAAGATCATAAAGCAAAGCGTACACATATGGCTAcgcacaaaaattacaaaagttggCTAGAAAGTCTACCACTAAAACGACTCTTGATGTGTGATGTGGGCgATTGTGACGAGTGTTACAAGCAATGGACTCCATTACAGAGGCACAAACGTCACGCTCACAAATCAAATACCTGTCGAATATGTGATCAAAAGTTTGCGAATTCGAATGAACTTCAAGAGCACATCGCACAGTGCCAATTAACTGCATTAACCTGCCAATTTTGTGAAAAAGTATGTCCGACCAAAATGTCCTTGGCCGTGCATGTGGCTAGAAGGCACAATAACAAAAATGTCTTCTGTCCGCATTGTGCAGCCGCATATAGAGATGAGCAGGCCTTGCAAGAGCATATCGACTATGTACACGTGCCTGTCCCTTGTACACTTTGTGGAAAAGTAATCAAATGCAGGCGATACTTAGAGGTGCATATGCGAGCAATTCATGTTAGTGAATGCAGATACTTTTGCACGCATTGCAATAAAGGTTTCTATCATCGCTCGCAAAAAGAATTGCACGAGGAGAATGTTCACCCGGCCGCAGTTTACAAATGTGGCGAATGTAAATTTACAACAAACTATGCAAAATCATTAGATATCCATATTGCCAGGCATTTGGAAATTTCCGAATTCAATTGTCCGCATTGCCCTAAAAAATTCGGCCGTAAAAGCGCGCTTAATATGCATATCAGACGGCATAAGGCTGATAAGCCCTTCAGATGTTCAGACACCATTGTTGATGGCTGTGATGCTGCATACGTCACACAACATCTACTAAATAATCacattaaaagaaaacattCCTTGCATTCGCAACAAACTAAAGCAAATAGTGTTACCAGTCAGCAAAAGAAAAGTACCGCAGCATCAATacgaaaatcaaaatcaaaaacaaaaagcaaaacagaAACCGAAACAGTGAAAAACAAGTCCAATTCAACAGCTAAAGAAATAAAGTGCGAGAATGTAAATGCAAACAACGATATTACACTGTCCAATACAGGCGCTGTTGACATACTTTTTGAAGCCGAGGAATCGAGCATTGCTGCAGTGGAGCTGCCGGGTGAAAACTCCTTCATGGCTGCTGAAGTTTTACCGAGTGGCAATAACGAGACTTATATGCTGGTGGTAGTGGACGATGAGACTATGGAAATGGTTAACAACAGTAGCGGCGAACTTATTCTACTTGAAAACGTCGAATATCCTACCAGCTGA
- Protein Sequence
- MAEEMPENTSEDEQFSDAPESIESDDEALPNFAFPNLKDDPDLLYEFNTEYDNADSLREYLDEAVASNFNTLEFKWNSECLICCEQFEEYQDLLQHCIMFHENEFNEYACTLQDCDVVFRSEYSLARHLVLRHSDLQSIKIYGSCPYCDLRFSNFHQLNKHSCYRKLTRRACTQPYCQYCKQEFVSHKRFVFHLQFHLAKRRSKICLICNKDFTNVDEFFVHVNYEHEPPGTLACTICDRIFAEMEPFVKHQNSHKIKPKYECDECLRTYRNKKLLQAHKEGVHTNIEYKCDLCPKIFPSLAILQNHLKWHESDAEVRVFTCTSCGLIGSDCDSLEKHTSDLSTDCFYGEIEEEILIVAYSCHFCAQDFKDKDSLRKHRATGVHENEMFYCPLCNEELEDHKAKRTHMATHKNYKSWLESLPLKRLLMCDVGDCDECYKQWTPLQRHKRHAHKSNTCRICDQKFANSNELQEHIAQCQLTALTCQFCEKVCPTKMSLAVHVARRHNNKNVFCPHCAAAYRDEQALQEHIDYVHVPVPCTLCGKVIKCRRYLEVHMRAIHVSECRYFCTHCNKGFYHRSQKELHEENVHPAAVYKCGECKFTTNYAKSLDIHIARHLEISEFNCPHCPKKFGRKSALNMHIRRHKADKPFRCSDTIVDGCDAAYVTQHLLNNHIKRKHSLHSQQTKANSVTSQQKKSTAASIRKSKSKTKSKTETETVKNKSNSTAKEIKCENVNANNDITLSNTGAVDILFEAEESSIAAVELPGENSFMAAEVLPSGNNETYMLVVVDDETMEMVNNSSGELILLENVEYPTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00081513; iTF_00083260;
- 90% Identity
- iTF_00081513; iTF_00083260;
- 80% Identity
- -