Alud031807.2
Basic Information
- Insect
- Anastrepha ludens
- Gene Symbol
- -
- Assembly
- GCA_028408465.1
- Location
- JAPVRI010117599.1:11214-11873[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 9.8e-08 0.00025 22.1 0.0 5 38 15 48 12 52 0.89 2 3 4 1e+04 -2.2 0.0 4 19 98 113 98 115 0.67 3 3 5.8 1.5e+04 -2.7 0.0 14 22 140 147 136 147 0.78
Sequence Information
- Coding Sequence
- ATGCCAAAAAAGGGGAAAATACGGAAATGGAACCCGAATATGATGAAAATTGCGATTGAGGCTGTAAGGAGTGAGGAAATTGGCACATTTTTTGCATCAAATAGATTTGATGTGCCGCGCTTCACACTACAAAGAATGGCAAGGAGTAACTCCTCTCCTAACAAACTAATAAAGACACCACTTGGACGTAAGCCAGTACTAAATGAAGAAACTGAGAAAGATATCGTAAAGTATGCATTGGAAATGGAAACAAGATTTTGGGGCCTTACAAGACGCGATATTAGTTCGATTGCGTTTCAGTTGGCTGTAAACGCCCATGTCCCAAATAAGATTTCTGTCCCAAAGCAATGTGCTGGAAAAGACTGGCTCTACGGATTCCTTTGCAGGCACAAAAATGAGATAAGTTGTCGTGTTCCAACAGGAACCTCTTTTAATAGGGCAAAGGGAttcacaaaagaaaatgtgaaaGTTTTTTTCGATATACTTGAGCAAAAGTACGAGAATCACAAATTTCCACCATCCTCAATATGGAATTTGGATGAAACAGGGCTTTTAGTTGCACAGAGCAAGCTACCTAAGGTTTTGTCCTACAAGAGGAAACGCCAGGTTGGTGCAAGAACATCTGCTGAGCGTGGATCTTTGGTAACAGTTATTAGCTGA
- Protein Sequence
- MPKKGKIRKWNPNMMKIAIEAVRSEEIGTFFASNRFDVPRFTLQRMARSNSSPNKLIKTPLGRKPVLNEETEKDIVKYALEMETRFWGLTRRDISSIAFQLAVNAHVPNKISVPKQCAGKDWLYGFLCRHKNEISCRVPTGTSFNRAKGFTKENVKVFFDILEQKYENHKFPPSSIWNLDETGLLVAQSKLPKVLSYKRKRQVGARTSAERGSLVTVIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -